116 lines
2.3 KiB
Nix
116 lines
2.3 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools,
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# dependencies
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matplotlib,
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numpy,
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pandas,
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pywavelets,
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requests,
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scikit-learn,
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scipy,
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# tests
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astropy,
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coverage,
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mock,
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plotly,
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pytest-cov-stub,
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pytestCheckHook,
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writableTmpDirAsHomeHook,
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}:
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buildPythonPackage rec {
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pname = "neurokit2";
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version = "0.2.12";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "neuropsychology";
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repo = "NeuroKit";
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tag = "v${version}";
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hash = "sha256-gn02l0vYl+/7hXp4gFVlgblxC4dewXckW3JL3wPC89Y=";
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};
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postPatch = ''
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substituteInPlace setup.py \
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--replace-fail '"pytest-runner", ' ""
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'';
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build-system = [
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setuptools
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];
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dependencies = [
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matplotlib
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numpy
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pandas
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pywavelets
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requests
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scikit-learn
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scipy
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];
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nativeCheckInputs = [
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pytest-cov-stub
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mock
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plotly
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astropy
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coverage
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pytestCheckHook
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writableTmpDirAsHomeHook
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];
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disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [
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# Crash in matplotlib (Fatal Python error: Aborted)
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"test_events_plot"
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];
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disabledTestPaths = [
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# Required dependencies not available in nixpkgs
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"tests/tests_bio.py"
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"tests/tests_complexity.py"
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"tests/tests_data.py"
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"tests/tests_ecg.py"
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"tests/tests_ecg_delineate.py"
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"tests/tests_ecg_findpeaks.py"
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"tests/tests_eda.py"
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"tests/tests_eeg.py"
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"tests/tests_emg.py"
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"tests/tests_eog.py"
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"tests/tests_epochs.py"
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"tests/tests_hrv.py"
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"tests/tests_ppg.py"
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"tests/tests_rsp.py"
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"tests/tests_signal.py"
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# Dependency is broken `mne-python`
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"tests/tests_microstates.py"
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];
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pytestFlags = [
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# Otherwise, test collection fails with:
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# AttributeError: module 'scipy.ndimage._delegators' has no attribute '@py_builtins_signature'. Did you mean: 'grey_dilation_signature'?
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# https://github.com/scipy/scipy/issues/22236
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"--assert=plain"
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];
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pythonImportsCheck = [
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"neurokit2"
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];
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meta = {
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description = "Python Toolbox for Neurophysiological Signal Processing";
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homepage = "https://github.com/neuropsychology/NeuroKit";
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changelog = "https://github.com/neuropsychology/NeuroKit/releases/tag/${src.tag}";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ genga898 ];
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};
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}
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