57 lines
1.2 KiB
Nix
57 lines
1.2 KiB
Nix
{
|
|
lib,
|
|
buildPythonPackage,
|
|
fetchFromGitHub,
|
|
numpy,
|
|
pytestCheckHook,
|
|
pythonOlder,
|
|
zlib,
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "pybigwig";
|
|
version = "0.3.24";
|
|
format = "setuptools";
|
|
|
|
disabled = pythonOlder "3.9";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "deeptools";
|
|
repo = "pyBigWig";
|
|
tag = version;
|
|
hash = "sha256-gK3cOwbvQtf+g1H/4x69swqCFdkBwpV7ZOrbE0eANh0=";
|
|
};
|
|
|
|
buildInputs = [ zlib ];
|
|
|
|
nativeCheckInputs = [
|
|
numpy
|
|
pytestCheckHook
|
|
];
|
|
|
|
pythonImportsCheck = [ "pyBigWig" ];
|
|
|
|
enabledTestPaths = [ "pyBigWigTest/test*.py" ];
|
|
|
|
disabledTests = [
|
|
# Test file is downloaded from GitHub
|
|
"testAll"
|
|
"testBigBed"
|
|
"testFoo"
|
|
"testNumpyValues"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "File access to bigBed files, and read and write access to bigWig files";
|
|
longDescription = ''
|
|
A Python extension, written in C, for quick access to bigBed files
|
|
and access to and creation of bigWig files. This extension uses
|
|
libBigWig for local and remote file access.
|
|
'';
|
|
homepage = "https://github.com/deeptools/pyBigWig";
|
|
changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${src.tag}";
|
|
license = licenses.mit;
|
|
maintainers = with maintainers; [ scalavision ];
|
|
};
|
|
}
|