55 lines
1.3 KiB
Nix
55 lines
1.3 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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cython,
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gcc,
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click,
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pytestCheckHook,
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pythonOlder,
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setuptools,
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}:
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buildPythonPackage rec {
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pname = "primer3";
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version = "2.1.0";
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pyproject = true;
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "libnano";
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repo = "primer3-py";
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tag = "v${version}";
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hash = "sha256-Kp4JH57gEdj7SzY+7XGBzGloWuTSwUQRBK9QbgXQfUE=";
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};
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build-system = [ setuptools ];
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nativeBuildInputs = [ cython ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ gcc ];
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nativeCheckInputs = [
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click
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pytestCheckHook
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];
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# We are not sure why exactly this is need. It seems `pytestCheckHook`
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# doesn't find extension modules installed in $out/${python.sitePackages},
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# and the tests rely upon them. This was initially reported upstream at
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# https://github.com/libnano/primer3-py/issues/120 and we investigate this
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# downstream at: https://github.com/NixOS/nixpkgs/issues/255262.
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preCheck = ''
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python setup.py build_ext --inplace
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'';
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pythonImportsCheck = [ "primer3" ];
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meta = with lib; {
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description = "Oligo analysis and primer design";
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homepage = "https://github.com/libnano/primer3-py";
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changelog = "https://github.com/libnano/primer3-py/blob/${src.tag}/CHANGES";
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license = licenses.gpl2Only;
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maintainers = with maintainers; [ fab ];
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};
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}
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