Emily
fdb820602b
To reproduce:
$ nix run nixpkgs/3b32825de172d0bc85664f495edb096b10862524#ast-grep \
-- scan --update-all --inline-rules '
id: nix-x86_64-darwin
language: nix
rule:
any:
- pattern: "\"x86_64-darwin\""
kind: list_expression > string_expression
- pattern:
context: "{ \"x86_64-darwin\" = $EXPR; }"
selector: binding
- pattern:
context: "{ x86_64-darwin = $EXPR; }"
selector: binding
fix:
template: ""
' pkgs
$ nix run nixpkgs/3b32825de172d0bc85664f495edb096b10862524#ast-grep \
-- scan --update-all --inline-rules '
id: json-first-x86_64-darwin
language: json
rule:
kind: object > pair:nth-child(1)
has:
pattern: "\"x86_64-darwin\""
field: key
fix:
template: ""
expandEnd: { regex: "," }
' pkgs
$ nix run nixpkgs/3b32825de172d0bc85664f495edb096b10862524#ast-grep \
-- scan --update-all --inline-rules '
id: json-x86_64-darwin
language: json
rule:
kind: object > pair
has:
pattern: "\"x86_64-darwin\""
field: key
fix:
template: ""
expandStart: { regex: "," }
' pkgs
$ git restore pkgs/by-name/om/omnix/package.nix
$ git diff --name-only -z \
| nix shell nixpkgs/3b32825de172d0bc85664f495edb096b10862524#gnused \
-c xargs -0 sed -i '/^$/N; /^\n\? \+$/d'
$ treefmt
49 lines
974 B
Nix
49 lines
974 B
Nix
{
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lib,
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stdenv,
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fetchurl,
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zlib,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "subread";
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version = "2.1.1";
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src = fetchurl {
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url = "mirror://sourceforge/subread/subread-${finalAttrs.version}/subread-${finalAttrs.version}-source.tar.gz";
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sha256 = "sha256-Y5LXxmgxzddn5YJRiSp5pRtvq47QupZxrV6F/xqwHqo=";
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};
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buildInputs = [
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zlib
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];
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configurePhase = ''
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runHook preConfigure
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cd src
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cp Makefile.${if stdenv.hostPlatform.isLinux then "Linux" else "MacOS"} Makefile
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runHook postConfigure
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'';
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makeFlags = [ "CC_EXEC=cc" ];
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installPhase = ''
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mkdir $out
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cp -r ../bin $out
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'';
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meta = {
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broken = stdenv.hostPlatform.isDarwin;
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description = "High-performance read alignment, quantification and mutation discovery";
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license = lib.licenses.gpl3;
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maintainers = with lib.maintainers; [ jbedo ];
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platforms = [
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"x86_64-linux"
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];
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homepage = "https://subread.sourceforge.net/";
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};
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})
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