quantenzitrone
626f23ce26
this shouldn't create any rebuilds
the following script was used to generate this:
```fish
#!/usr/bin/env fish
# nix shell .#nixfmt nixpkgs#{nixf-diagnose,ripgrep,sd}
set base (git rev-parse HEAD)
set scope pkgs/by-name
set files (rg --files-with-matches -F 'stdenv.mkDerivation rec {' $scope | sort -u)
for file in $files
echo $file
sd -F 'stdenv.mkDerivation rec {' 'stdenv.mkDerivation (finalAttrs: {' $file
# version
sd -F 'version}' 'finalAttrs.version}' $file
sd -F '${version' '${finalAttrs.version' $file
sd -F '= version' '= finalAttrs.version' $file
sd -F 'inherit version;' 'inherit (finalAttrs) version;' $file
sd -F ' + version;' ' + finalAttrs.version;' $file
sd 'replaceStrings (.*) version' 'replaceStrings $1 finalAttrs.version' $file
sd -F 'splitVersion version' 'splitVersion finalAttrs.version' $file
sd -F 'versionAtLeast version' 'versionAtLeast finalAttrs.version' $file
sd 'versions\.([a-z]+) version' 'versions.$1 finalAttrs.version' $file
# src
sd -F 'src}' 'finalAttrs.src}' $file
sd -F '${src' '${finalAttrs.src' $file
sd -F '= src' '= finalAttrs.src' $file
sd -F 'inherit src;' 'inherit (finalAttrs) src;' $file
sd -F 'inherit (src' 'inherit (finalAttrs.src' $file
# meta
sd -F '${meta' '${finalAttrs.meta' $file
sd -F '= meta' '= finalAttrs.meta' $file
sd -F 'inherit (meta' 'inherit (finalAttrs.meta' $file
# other
sd -F 'inherit version src;' 'inherit (finalAttrs) version src;' $file
sd -F 'makeLibraryPath buildInputs' 'makeLibraryPath finalAttrs.buildInputs' $file
sd -F 'buildInputs}' 'finalAttrs.buildInputs}' $file
sd -F 'desktopItem}' 'finalAttrs.desktopItem}' $file
sd -F 'runtimeLibs}' 'finalAttrs.runtimeLibs}' $file
sd -F 'libPath}' 'finalAttrs.libPath}' $file
sd -F 'runtimeDependencies}' 'finalAttrs.runtimeDependencies}' $file
sd -F 'nativeRuntimeInputs}' 'finalAttrs.nativeRuntimeInputs}' $file
sd -F '(!doCheck)' '(!finalAttrs.doCheck)' $file
sd -F 'optional doCheck' 'optional finalAttrs.doCheck' $file
sd -F 'optionals doCheck' 'optionals finalAttrs.doCheck' $file
sd -F '++ runtimeDependencies' '++ finalAttrs.runtimeDependencies' $file
# pname (restored afterwards)
sd -F 'pname}' 'finalAttrs.pname}' $file
sd -F '${pname' '${finalAttrs.pname' $file
sd -F '= pname' '= finalAttrs.pname' $file
# close finalAttrs lambda
echo ')' >>$file
# catch some errors early
if ! nixfmt $file
git restore $file
continue
end
if ! nixf-diagnose -i sema-primop-overridden $file
git restore $file
continue
end
end
set torestore (rg -F .finalAttrs --files-with-matches $scope)
if test (count $torestore) -gt 0
git restore $torestore
end
set torestore (rg -F finalAttrs.pname --files-with-matches $scope)
if test (count $torestore) -gt 0
git restore $torestore
end
# commit for faster eval times
git add pkgs
git commit --no-gpg-sign -m temp
set torestore
for file in $files
# file hasn't changed
if git diff --quiet $base $file
continue
end
# try to eval the package to definitely catch all errors
echo $file
set pname (string split / $file -f 4)
if ! nix eval .#$pname
set torestore $torestore $file
end
end
# restore files that don't eval
git reset --soft $base
git restore --staged .
if test (count $torestore) -gt 0
git restore $torestore
end
```
after that some manual cleanup was done:
- restoring files that cause changes in the number of lines
- restoring files that cause rebuilds
- restoring files that cause merge conflicts with staging
61 lines
1.3 KiB
Nix
61 lines
1.3 KiB
Nix
{
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lib,
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stdenv,
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fetchurl,
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zlib,
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htslib,
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perl,
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ncurses ? null,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "samtools";
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version = "1.22.1";
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src = fetchurl {
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url = "https://github.com/samtools/samtools/releases/download/${finalAttrs.version}/samtools-${finalAttrs.version}.tar.bz2";
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hash = "sha256-Aqpc0LpS4GwggAVOBZ19d6iF3+lxfDHNid/npAR+2g4=";
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};
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# tests require `bgzip` from the htslib package
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nativeCheckInputs = [ htslib ];
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nativeBuildInputs = [ perl ];
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buildInputs = [
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zlib
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ncurses
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htslib
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];
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preConfigure = lib.optional stdenv.hostPlatform.isStatic ''
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export LIBS="-lz -lbz2 -llzma"
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'';
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makeFlags = lib.optional stdenv.hostPlatform.isStatic "AR=${stdenv.cc.targetPrefix}ar";
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configureFlags = [
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"--with-htslib=${htslib}"
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]
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++ lib.optional (ncurses == null) "--without-curses"
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++ lib.optionals stdenv.hostPlatform.isStatic [ "--without-curses" ];
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preCheck = ''
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patchShebangs test/
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = {
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description = "Tools for manipulating SAM/BAM/CRAM format";
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license = lib.licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [
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mimame
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unode
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];
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};
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})
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