50 lines
1.3 KiB
Nix
50 lines
1.3 KiB
Nix
{
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stdenv,
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lib,
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makeWrapper,
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fetchzip,
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jre,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "bftools";
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version = "7.3.0";
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src = fetchzip {
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url = "http://downloads.openmicroscopy.org/bio-formats/${finalAttrs.version}/artifacts/bftools.zip";
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hash = "sha256-EQ7P07d53e6Q/9Wt2Pa1h0TfuYblOZeByGW30oE3i6M=";
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};
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installPhase = ''
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find . -maxdepth 1 -perm -111 -type f -not -name "*.sh" \
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-exec install -vD {} "$out"/bin/{} \;
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mkdir $out/libexec
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mkdir -p $out/share/java
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cp ./*.sh $out/libexec
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cp ./*.jar $out/share/java
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for file in $out/bin/*; do
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substituteInPlace $file --replace "\$BF_DIR" $out/libexec
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done
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substituteInPlace $out/libexec/bf.sh --replace "\$BF_JAR_DIR" $out/share/java
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'';
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postFixup = ''
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wrapProgram $out/libexec/bf.sh --prefix PATH : "${lib.makeBinPath [ jre ]}"
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'';
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nativeBuildInputs = [ makeWrapper ];
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meta = {
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description = "Bundle of scripts for using Bio-Formats on the command line with bioformats_package.jar already included";
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mainProgram = "showinf";
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sourceProvenance = with lib.sourceTypes; [ binaryBytecode ];
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license = lib.licenses.gpl2;
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platforms = lib.platforms.all;
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homepage = "https://www.openmicroscopy.org/bio-formats/";
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maintainers = [ ];
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};
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})
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