{ stdenv, lib, buildPythonPackage, fetchurl, isPyPy, R, rWrapper, xz, bzip2, zlib, zstd, icu, pytestCheckHook, setuptools, cffi, }: buildPythonPackage rec { version = "3.6.3"; format = "pyproject"; pname = "rpy2-rinterface"; disabled = isPyPy; src = fetchurl { url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${ builtins.replaceStrings [ "-" ] [ "_" ] pname }-${version}.tar.gz"; hash = "sha256-R3vC9R0AetG4VnxdS6GvD1mVFobufxBXagbQg03ld28="; }; patches = [ # https://github.com/rpy2/rpy2/pull/1171#issuecomment-3263994962 ./restore-initr-simple.patch # R_LIBS_SITE is used by the nix r package to point to the installed R libraries. # This patch sets R_LIBS_SITE when rpy2 is imported. ./rpy2-3.x-r-libs-site.patch ]; postPatch = '' substituteInPlace 'src/rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE" ''; buildInputs = [ xz bzip2 zlib zstd icu ] ++ rWrapper.recommendedPackages; nativeBuildInputs = [ R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly) ]; propagatedBuildInputs = [ cffi setuptools ]; nativeCheckInputs = [ pytestCheckHook ]; # https://github.com/rpy2/rpy2/issues/1111 disabledTests = [ "test_parse_incomplete_error" "test_parse_error" "test_parse_error_when_evaluting" ]; meta = { homepage = "https://rpy2.github.io/"; description = "Python interface to R"; license = lib.licenses.gpl2Plus; platforms = lib.platforms.unix; maintainers = with lib; [ teams.sage ]; }; }