diff --git a/pkgs/applications/science/biology/iqtree/default.nix b/pkgs/applications/science/biology/iqtree/default.nix
new file mode 100644
index 000000000000..0d567733f923
--- /dev/null
+++ b/pkgs/applications/science/biology/iqtree/default.nix
@@ -0,0 +1,32 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, boost
+, eigen
+, zlib
+}:
+
+stdenv.mkDerivation rec {
+  pname = "iqtree";
+  version = "2.2.0.4";
+
+  src = fetchFromGitHub {
+    owner = "iqtree";
+    repo = "iqtree2";
+    rev = "v${version}";
+    sha256 = "sha256:0ickw1ldpvv2m66yzbvqfhn8k07qdkhbjrlqjs6vcf3s42j5c6pq";
+    fetchSubmodules = true;
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  buildInputs = [ boost eigen zlib ];
+
+  meta = with lib; {
+    homepage = "http://www.iqtree.org/";
+    description = "Efficient and versatile phylogenomic software by maximum likelihood";
+    license = licenses.lgpl2;
+    maintainers = with maintainers; [ bzizou ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 573b055068b3..59b2e9cc748a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -34112,6 +34112,8 @@ with pkgs;
 
   inormalize = callPackage ../applications/science/biology/inormalize { };
 
+  iqtree = callPackage ../applications/science/biology/iqtree { };
+
   itsx = callPackage ../applications/science/biology/itsx { };
 
   iv = callPackage ../applications/science/biology/iv {