diff --git a/pkgs/development/interpreters/python/default.nix b/pkgs/development/interpreters/python/default.nix
index 6d3c677397d2..cc35fbc5804e 100644
--- a/pkgs/development/interpreters/python/default.nix
+++ b/pkgs/development/interpreters/python/default.nix
@@ -257,9 +257,10 @@ in {
     sourceVersion = {
       major = "7";
       minor = "3";
-      patch = "5";
+      patch = "9";
     };
-    sha256 = "sha256-wERP2YcwWMHA2Z4TqTTpIoXLBZksmWi/Ujwyv5vsCp0=";
+
+    sha256 = "sha256-ObCXKVb2VIzlgoAZ264SUDwy1svpGivs+I0+QsxSGXs=";
     pythonVersion = "2.7";
     db = db.override { dbmSupport = !stdenv.isDarwin; };
     python = __splicedPackages.python27;
@@ -268,25 +269,32 @@ in {
     inherit (darwin.apple_sdk.frameworks) Security;
   };
 
-  pypy38 = callPackage ./pypy {
-    self = __splicedPackages.pypy38;
+  pypy39 = callPackage ./pypy {
+    self = __splicedPackages.pypy39;
     sourceVersion = {
       major = "7";
       minor = "3";
-      patch = "7";
+      patch = "9";
     };
-    sha256 = "sha256-Ia4zn09QFtbKcwAwXz47VUNzg1yzw5qQQf4w5oEcgMY=";
-    pythonVersion = "3.8";
+
+    sha256 = "sha256-Krqh6f4ewOIzyfvDd6DI6aBjQICo9PMOtomDAfZhjBI=";
+    pythonVersion = "3.9";
     db = db.override { dbmSupport = !stdenv.isDarwin; };
     python = __splicedPackages.python27;
     inherit passthruFun;
     inherit (darwin) libunwind;
     inherit (darwin.apple_sdk.frameworks) Security;
   };
-  pypy37 = __splicedPackages.pypy38.override {
+
+  pypy38 = __splicedPackages.pypy39.override {
+    self = __splicedPackages.pythonInterpreters.pypy38;
+    pythonVersion = "3.8";
+    sha256 = "sha256-W12dklbxKhKa+DhOL1gb36s7wPu+OgpIDZwdLpVJDrE=";
+  };
+  pypy37 = __splicedPackages.pypy39.override {
     self = __splicedPackages.pythonInterpreters.pypy37;
     pythonVersion = "3.7";
-    sha256 = "sha256-LtAqyecQhZxBvILer7CGGXkruaJ+6qFnbHQe3t0hTdc=";
+    sha256 = "sha256-cEJhY7GU7kYAmYbuptlCYJij/7VS2c29PfqmSkc3P0k=";
   };
 
   pypy27_prebuilt = callPackage ./pypy/prebuilt_2_7.nix {
@@ -295,23 +303,24 @@ in {
     sourceVersion = {
       major = "7";
       minor = "3";
-      patch = "8";
+      patch = "9";
     };
-    sha256 = "0h493q0lhpz035afi4g09f4mz5a72vqx4sa7qcry5z4zagxq8bhz"; # linux64
+
+    sha256 = "sha256-FyqSiwCWp+ALfVj1I/VzAMNcPef4IkkeKnvIRTdcI/g="; # linux64
     pythonVersion = "2.7";
     inherit passthruFun;
   };
 
-  pypy38_prebuilt = callPackage ./pypy/prebuilt.nix {
+  pypy39_prebuilt = callPackage ./pypy/prebuilt.nix {
     # Not included at top-level
     self = __splicedPackages.pythonInterpreters.pypy38_prebuilt;
     sourceVersion = {
       major = "7";
       minor = "3";
-      patch = "7";
+      patch = "9";
     };
-    sha256 = "sha256-Xe43x8PLixYAKPveOlkBxoBD36VFoWeUUCuJfUvEDX4="; # linux64
-    pythonVersion = "3.8";
+    sha256 = "sha256-RoGMs9dLlrNHh1SDQ9Jm4lYrUx3brzMDg7qTD/GTDtU="; # linux64
+    pythonVersion = "3.9";
     inherit passthruFun;
   };
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5bbd7b64d18b..6cfebee28232 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -15554,7 +15554,7 @@ with pkgs;
 
   pypy = pypy2;
   pypy2 = pypy27;
-  pypy3 = pypy38;
+  pypy3 = pypy39;
 
   # Python interpreter that is build with all modules, including tkinter.
   # These are for compatibility and should not be used inside Nixpkgs.
@@ -15600,7 +15600,7 @@ with pkgs;
   };
 
   pythonInterpreters = callPackage ./../development/interpreters/python { };
-  inherit (pythonInterpreters) python27 python37 python38 python39 python310 python311 python3Minimal pypy27 pypy38 pypy37 rustpython;
+  inherit (pythonInterpreters) python27 python37 python38 python39 python310 python311 python3Minimal pypy27 pypy39 pypy38 pypy37 rustpython;
 
   # List of extensions with overrides to apply to all Python package sets.
   pythonPackagesExtensions = [ ];
@@ -15617,6 +15617,7 @@ with pkgs;
   pypy3Packages = pypy3.pkgs;
   pypy37Packages = pypy37.pkgs;
   pypy38Packages = pypy38.pkgs;
+  pypy39Packages = pypy39.pkgs;
 
   py3c = callPackage ../development/libraries/py3c { };