From 91d7056e9e0442e5e571107f430b44a006b526ac Mon Sep 17 00:00:00 2001
From: pancaek <20342389+pancaek@users.noreply.github.com>
Date: Wed, 8 Jul 2026 14:12:33 -0700
Subject: [PATCH] shogun: move to by-name/

---
 .../machine-learning => by-name/sh}/shogun/eigen-3.4.patch    | 0
 .../sh}/shogun/fix-virtual-destruction.patch                  | 0
 .../shogun/default.nix => by-name/sh/shogun/package.nix}      | 4 ++--
 .../sh}/shogun/svmlight-scrubber.patch                        | 0
 pkgs/top-level/all-packages.nix                               | 4 ----
 5 files changed, 2 insertions(+), 6 deletions(-)
 rename pkgs/{applications/science/machine-learning => by-name/sh}/shogun/eigen-3.4.patch (100%)
 rename pkgs/{applications/science/machine-learning => by-name/sh}/shogun/fix-virtual-destruction.patch (100%)
 rename pkgs/{applications/science/machine-learning/shogun/default.nix => by-name/sh/shogun/package.nix} (99%)
 rename pkgs/{applications/science/machine-learning => by-name/sh}/shogun/svmlight-scrubber.patch (100%)

diff --git a/pkgs/applications/science/machine-learning/shogun/eigen-3.4.patch b/pkgs/by-name/sh/shogun/eigen-3.4.patch
similarity index 100%
rename from pkgs/applications/science/machine-learning/shogun/eigen-3.4.patch
rename to pkgs/by-name/sh/shogun/eigen-3.4.patch
diff --git a/pkgs/applications/science/machine-learning/shogun/fix-virtual-destruction.patch b/pkgs/by-name/sh/shogun/fix-virtual-destruction.patch
similarity index 100%
rename from pkgs/applications/science/machine-learning/shogun/fix-virtual-destruction.patch
rename to pkgs/by-name/sh/shogun/fix-virtual-destruction.patch
diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/by-name/sh/shogun/package.nix
similarity index 99%
rename from pkgs/applications/science/machine-learning/shogun/default.nix
rename to pkgs/by-name/sh/shogun/package.nix
index fae5f8a00782..e7ad0d79e559 100644
--- a/pkgs/applications/science/machine-learning/shogun/default.nix
+++ b/pkgs/by-name/sh/shogun/package.nix
@@ -15,7 +15,7 @@
   lapack,
   glpk,
   # data
-  protobuf,
+  protobuf_21,
   json_c,
   libxml2,
   hdf5,
@@ -130,7 +130,7 @@ stdenv.mkDerivation (finalAttrs: {
     blas
     lapack
     glpk
-    protobuf
+    protobuf_21
     json_c
     libxml2
     hdf5
diff --git a/pkgs/applications/science/machine-learning/shogun/svmlight-scrubber.patch b/pkgs/by-name/sh/shogun/svmlight-scrubber.patch
similarity index 100%
rename from pkgs/applications/science/machine-learning/shogun/svmlight-scrubber.patch
rename to pkgs/by-name/sh/shogun/svmlight-scrubber.patch
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index dc70e4476e16..18917a22d016 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9245,10 +9245,6 @@ with pkgs;
 
   scx = recurseIntoAttrs (callPackage ../os-specific/linux/scx { });
 
-  shogun = callPackage ../applications/science/machine-learning/shogun {
-    protobuf = protobuf_21;
-  };
-
   inherit
     ({
       softmaker-office = callPackage ../applications/office/softmaker/softmaker-office.nix { };