From e7d608e57f45fa68ed537e1d6ad0594ed84ddc62 Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Wed, 18 Jun 2025 14:04:58 +0200
Subject: [PATCH 1/2] python3Packages.autograd: 1.7.0 -> 1.8.0

Diff: https://github.com/HIPS/autograd/compare/v1.7.0...v1.8.0

Changelog: https://github.com/HIPS/autograd/releases/tag/v1.8.0
---
 .../python-modules/autograd/default.nix       | 35 ++++++++++++-------
 1 file changed, 23 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/python-modules/autograd/default.nix b/pkgs/development/python-modules/autograd/default.nix
index e8be58101302..9a86fb665e81 100644
--- a/pkgs/development/python-modules/autograd/default.nix
+++ b/pkgs/development/python-modules/autograd/default.nix
@@ -1,38 +1,49 @@
 {
   lib,
   buildPythonPackage,
-  fetchPypi,
+  fetchFromGitHub,
+
+  # build-system
   hatchling,
+
+  # dependencies
   numpy,
+
+  # tests
+  pytest-cov,
+  pytest-xdist,
   pytestCheckHook,
-  pythonOlder,
 }:
 
 buildPythonPackage rec {
   pname = "autograd";
-  version = "1.7.0";
+  version = "1.8.0";
   pyproject = true;
 
-  disabled = pythonOlder "3.8";
-
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-3nQ/02jW31I803MF3NFxhhqXUqFESTZ30sn1pWmD/y8=";
+  src = fetchFromGitHub {
+    owner = "HIPS";
+    repo = "autograd";
+    tag = "v${version}";
+    hash = "sha256-k4rcalwznKS2QvmyTLra+ciWFifnILW/DDdB8D+clxQ=";
   };
 
   build-system = [ hatchling ];
 
   dependencies = [ numpy ];
 
-  nativeCheckInputs = [ pytestCheckHook ];
+  nativeCheckInputs = [
+    pytest-cov
+    pytest-xdist
+    pytestCheckHook
+  ];
 
   pythonImportsCheck = [ "autograd" ];
 
-  meta = with lib; {
+  meta = {
     description = "Compute derivatives of NumPy code efficiently";
     homepage = "https://github.com/HIPS/autograd";
     changelog = "https://github.com/HIPS/autograd/releases/tag/v${version}";
-    license = licenses.mit;
-    maintainers = with maintainers; [ jluttine ];
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ jluttine ];
   };
 }

From 14cbd31ba909c060ad9a028b9ca11b177c6cb929 Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Wed, 18 Jun 2025 15:35:38 +0200
Subject: [PATCH 2/2] python3Packages.hyppo: 0.5.1 -> 0.5.2

Diff: https://github.com/neurodata/hyppo/compare/refs/tags/v0.5.1...refs/tags/v0.5.2

Changelog: https://github.com/neurodata/hyppo/releases/tag/v0.5.2
---
 .../python-modules/hyppo/default.nix          | 35 ++++++++++++-------
 1 file changed, 23 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/python-modules/hyppo/default.nix b/pkgs/development/python-modules/hyppo/default.nix
index dee9a7124c34..fef99ca10b24 100644
--- a/pkgs/development/python-modules/hyppo/default.nix
+++ b/pkgs/development/python-modules/hyppo/default.nix
@@ -1,32 +1,39 @@
 {
   lib,
-  autograd,
   buildPythonPackage,
   fetchFromGitHub,
+
+  # build-system
+  setuptools,
+
+  # dependencies
+  autograd,
   future,
-  matplotlib,
   numba,
   numpy,
-  pytestCheckHook,
-  pythonOlder,
+  pandas,
+  patsy,
   scikit-learn,
   scipy,
+  statsmodels,
+
+  # tests
+  matplotlib,
+  pytest-xdist,
+  pytestCheckHook,
   seaborn,
-  setuptools,
 }:
 
 buildPythonPackage rec {
   pname = "hyppo";
-  version = "0.5.1";
+  version = "0.5.2";
   pyproject = true;
 
-  disabled = pythonOlder "3.8";
-
   src = fetchFromGitHub {
     owner = "neurodata";
     repo = "hyppo";
     tag = "v${version}";
-    hash = "sha256-bYxqYSOOifQE3gbw8vNk/A13D5TPx7ERSgFvRHMXKGM=";
+    hash = "sha256-7Y+UhneIGwqjsPCnGAQWF/l4r1gFbYs3fdHhV46ZBjA=";
   };
 
   # some of the doctests (4/21) are broken, e.g. unbound variables, nondeterministic with insufficient tolerance, etc.
@@ -42,11 +49,15 @@ buildPythonPackage rec {
     future
     numba
     numpy
+    pandas
+    patsy
     scikit-learn
     scipy
+    statsmodels
   ];
 
   nativeCheckInputs = [
+    pytest-xdist
     pytestCheckHook
     matplotlib
     seaborn
@@ -55,11 +66,11 @@ buildPythonPackage rec {
     "hyppo"
   ];
 
-  meta = with lib; {
+  meta = {
     homepage = "https://github.com/neurodata/hyppo";
     description = "Python package for multivariate hypothesis testing";
     changelog = "https://github.com/neurodata/hyppo/releases/tag/v${version}";
-    license = licenses.mit;
-    maintainers = with maintainers; [ bcdarwin ];
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ bcdarwin ];
   };
 }