diff --git a/pkgs/development/interpreters/python/mk-python-derivation.nix b/pkgs/development/interpreters/python/mk-python-derivation.nix
index f3e5249c189e..0fb0a1326025 100644
--- a/pkgs/development/interpreters/python/mk-python-derivation.nix
+++ b/pkgs/development/interpreters/python/mk-python-derivation.nix
@@ -418,6 +418,7 @@ lib.extendMkDerivation {
           optional-dependencies
           ;
         updateScript = nix-update-script { };
+        ${if attrs ? stdenv then "__stdenvPythonCompat" else null} = attrs.stdenv;
       }
       // attrs.passthru or { };
 
diff --git a/pkgs/development/interpreters/python/python-packages-base.nix b/pkgs/development/interpreters/python/python-packages-base.nix
index 91d733a33c3e..77ac26630161 100644
--- a/pkgs/development/interpreters/python/python-packages-base.nix
+++ b/pkgs/development/interpreters/python/python-packages-base.nix
@@ -53,15 +53,28 @@ let
       f':
       lib.mirrorFunctionArgs f (
         args:
-        if !(lib.isFunction args) && (args ? stdenv) then
-          lib.warnIf (lib.oldestSupportedReleaseIsAtLeast 2511) ''
-            ${
-              args.name or args.pname or "<unnamed>"
-            }: Passing `stdenv` directly to `buildPythonPackage` or `buildPythonApplication` is deprecated. You should use their `.override` function instead, e.g:
-              buildPythonPackage.override { stdenv = customStdenv; } { }
-          '' (f'.override { inherit (args) stdenv; } (removeAttrs args [ "stdenv" ]))
+        let
+          result = f args;
+          getName = x: x.pname or (lib.getName (x.name or "<unnamed>"));
+          applyMsgStdenvArg =
+            name:
+            lib.warnIf (lib.oldestSupportedReleaseIsAtLeast 2511) ''
+              ${name}: Passing `stdenv` directly to `buildPythonPackage` or `buildPythonApplication` is deprecated. You should use their `.override` function instead, e.g:
+                buildPythonPackage.override { stdenv = customStdenv; } { }
+            '';
+        in
+        if lib.isFunction args && result ? __stdenvPythonCompat then
+          # Less reliable, as constructing with the wrong `stdenv` might lead to evaluation errors in the package definition.
+          f'.override { stdenv = applyMsgStdenvArg (getName result) result.__stdenvPythonCompat; } (
+            finalAttrs: removeAttrs (args finalAttrs) [ "stdenv" ]
+          )
+        else if (!lib.isFunction args) && (args ? stdenv) then
+          # More reliable, but only works when args is not `(finalAttrs: { })`
+          f'.override { stdenv = applyMsgStdenvArg (getName args) args.stdenv; } (
+            removeAttrs args [ "stdenv" ]
+          )
         else
-          f args
+          result
       )
       // {
         # Preserve the effect of overrideStdenvCompat when calling `buildPython*.override`.