From e8ec4953d2c9f991999018190d92d203ee10ad4d Mon Sep 17 00:00:00 2001
From: kyehn <kyehn@users.noreply.github.com>
Date: Fri, 13 Feb 2026 03:22:28 +0000
Subject: [PATCH] ausaxs: 1.1.7 -> 1.2.0

---
 .../au/ausaxs/cmake-no-fetchcontent.patch     | 45 +++++++++----------
 pkgs/by-name/au/ausaxs/package.nix            | 37 +++++----------
 2 files changed, 33 insertions(+), 49 deletions(-)

diff --git a/pkgs/by-name/au/ausaxs/cmake-no-fetchcontent.patch b/pkgs/by-name/au/ausaxs/cmake-no-fetchcontent.patch
index 551c84541598..cf59380de47b 100644
--- a/pkgs/by-name/au/ausaxs/cmake-no-fetchcontent.patch
+++ b/pkgs/by-name/au/ausaxs/cmake-no-fetchcontent.patch
@@ -1,6 +1,6 @@
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
-@@ -85,7 +85,7 @@
+@@ -110,7 +110,7 @@
  	set(DLIB_USE_MKL_FFT OFF)
  	set(DLIB_USE_FFMPEG OFF)
  	set(CMAKE_CXX_STANDARD 17) # dlib must be compiled with C++17
@@ -9,19 +9,33 @@
  	set(CMAKE_CXX_STANDARD 20) # continue with C++20	
  	add_compile_definitions("DLIB_AVAILABLE")
  endif()
-@@ -105,8 +105,9 @@
- 	GIT_REPOSITORY https://github.com/klytje/gcem
+@@ -141,7 +141,6 @@
+ 		thread_pool
+ 		GIT_REPOSITORY https://github.com/bshoshany/thread-pool
+ 	)
+-	FetchContent_MakeAvailable(thread_pool)
+ endif()
+ 
+ if(USE_SYSTEM_GCEM)
+@@ -151,7 +150,6 @@
+ 		gcem
+ 		GIT_REPOSITORY https://github.com/klytje/gcem
+ 	)
+-	FetchContent_MakeAvailable(GCEM)
+ endif()
+ 
+ set_property(
+@@ -160,7 +158,9 @@
  )
+ unset(compile_options)
  
--FetchContent_MakeAvailable(thread_pool GCEM backward)
 -include_directories(${thread_pool_SOURCE_DIR}/include ${gcem_SOURCE_DIR}/include ${backward_SOURCE_DIR})
++include_directories(${backward_SOURCE_DIR})
 +add_subdirectory(gcem)
-+add_subdirectory(backward)
-+include_directories(thread_pool/include gcem/include backward)
++include_directories(thread_pool/include gcem/include)
  
  ############################################
  ##           Find and link CURL           ##
-
 --- a/executable/gui/CMakeLists.txt
 +++ b/executable/gui/CMakeLists.txt
 @@ -6,7 +6,9 @@
@@ -35,20 +49,3 @@
  
  # set the path to the elements root & module path
  set(ELEMENTS_ROOT "${elements_SOURCE_DIR}")
-
---- a/tests/CMakeLists.txt
-+++ b/tests/CMakeLists.txt
-@@ -18,10 +18,10 @@
- 	GIT_TAG 914aeecfe23b1e16af6ea675a4fb5dbd5a5b8d0a
- 	GIT_PROGRESS TRUE
- )
--FetchContent_MakeAvailable(Catch2)
-+add_subdirectory(${CMAKE_SOURCE_DIR}/catch2 catch2_build)
-
- # make the tests available through CTest
--list(APPEND CMAKE_MODULE_PATH ${catch2_SOURCE_DIR}/extras)
-+list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/catch2/extras)
- include(CTest)
- include(Catch)
-
- 
diff --git a/pkgs/by-name/au/ausaxs/package.nix b/pkgs/by-name/au/ausaxs/package.nix
index 6b6cd5e0ec75..15e43eae4a9f 100644
--- a/pkgs/by-name/au/ausaxs/package.nix
+++ b/pkgs/by-name/au/ausaxs/package.nix
@@ -11,6 +11,8 @@
   pkg-config,
   cairo,
   gtk3,
+  catch2_3,
+  backward-cpp,
 }:
 
 let
@@ -35,20 +37,6 @@ let
     hash = "sha256-bnWakLHl/afpeFm6S32ku0IkniyIs8X+LE1NmV6p0ho=";
   };
 
-  backward-cpp = fetchFromGitHub {
-    owner = "bombela";
-    repo = "backward-cpp";
-    rev = "0bfd0a07a61551413ccd2ab9a9099af3bad40681";
-    hash = "sha256-nLH8jfdgzmlUTg6zwY/h0HVnDMeC9rvmX1x4Ithu9dI=";
-  };
-
-  catch2 = fetchFromGitHub {
-    owner = "catchorg";
-    repo = "Catch2";
-    rev = "914aeecfe23b1e16af6ea675a4fb5dbd5a5b8d0a";
-    hash = "sha256-2gK+CUpml6AaHcwNoq0tHLr2NwqtMPx+jP80/LLFFr4=";
-  };
-
   elements = fetchFromGitHub {
     owner = "cycfi";
     repo = "elements";
@@ -80,13 +68,13 @@ let
 in
 stdenv.mkDerivation (finalAttrs: {
   pname = "ausaxs";
-  version = "1.1.7";
+  version = "1.2.0";
 
   src = fetchFromGitHub {
     owner = "AUSAXS";
     repo = "AUSAXS";
     tag = "v${finalAttrs.version}";
-    hash = "sha256-/d6EXDn60ap7dluJZtVP5vGiJTn4ggF7XYZ6ONGipDs=";
+    hash = "sha256-vTuQsg76p0WHPadwqBdDGBSNgNmr5TxuwlNj47P+sa8=";
   };
 
   patches = [ ./cmake-no-fetchcontent.patch ];
@@ -95,23 +83,15 @@ stdenv.mkDerivation (finalAttrs: {
     cp --recursive --no-preserve=mode ${dlib} dlib
     cp --recursive --no-preserve=mode ${thread-pool} thread_pool
     cp --recursive --no-preserve=mode ${gcem} gcem
-    cp --recursive --no-preserve=mode ${backward-cpp} backward
-    cp --recursive --no-preserve=mode ${catch2} catch2
     cp --recursive --no-preserve=mode ${nfd} nfd
     cp --recursive --no-preserve=mode ${elements} elements
     cp --recursive --no-preserve=mode ${asio} asio
     cp --recursive --no-preserve=mode ${cycfi_infra} cycfi_infra
-    substituteInPlace executable/CMakeLists.txt \
-      --replace-fail "FetchContent_MakeAvailable(CLI11)" "find_package(CLI11 CONFIG REQUIRED)"
-    substituteInPlace include/crystal/crystal/miller/MillerGenerationFactory.h \
-      --replace-fail "namespace ausaxs::settings::crystal {enum class MillerGenerationChoice;}" '#include "../core/settings/CrystalSettings.h"'
     patch -p1 -d elements < ${./elements-cmake-no-fetchcontent.patch}
     substituteInPlace CMakeLists.txt \
       --replace-fail "-mavx" "${
         lib.optionalString (stdenv.hostPlatform.isx86_64 && stdenv.hostPlatform.isLinux) "-msse3"
       }"
-    sed -i '/#include <iostream>/a\
-    #include <numbers>' source/crystal/miller/FibonacciMillers.cpp
   '';
 
   nativeBuildInputs = [
@@ -122,6 +102,8 @@ stdenv.mkDerivation (finalAttrs: {
   ];
 
   buildInputs = [
+    backward-cpp
+    catch2_3
     curl
     cli11
     cairo
@@ -129,7 +111,12 @@ stdenv.mkDerivation (finalAttrs: {
     gtk3
   ];
 
-  cmakeFlags = [ (lib.cmakeBool "GUI" true) ];
+  cmakeFlags = [
+    (lib.cmakeBool "GUI" true)
+    (lib.cmakeBool "USE_SYSTEM_CATCH" true)
+    (lib.cmakeBool "USE_SYSTEM_CLI11" true)
+    (lib.cmakeBool "USE_SYSTEM_BACKWARD" true)
+  ];
 
   postInstall = ''
     cp --recursive lib/* $out/lib/