From da0531911b6922d1cd5e9bded0ee9882eb58bb9c Mon Sep 17 00:00:00 2001
From: Alexis Praga <alexis@praga.dev>
Date: Sun, 9 Feb 2025 23:44:54 +0100
Subject: [PATCH] dragmap: fix compilation issue

Missing include for Boost.
Upstream PR: https://github.com/Illumina/DRAGMAP/pull/66
---
 pkgs/by-name/dr/dragmap/boost-iterator-range.patch | 12 ++++++++++++
 pkgs/by-name/dr/dragmap/package.nix                | 14 ++++++++++----
 2 files changed, 22 insertions(+), 4 deletions(-)
 create mode 100644 pkgs/by-name/dr/dragmap/boost-iterator-range.patch

diff --git a/pkgs/by-name/dr/dragmap/boost-iterator-range.patch b/pkgs/by-name/dr/dragmap/boost-iterator-range.patch
new file mode 100644
index 000000000000..bd70eab43f49
--- /dev/null
+++ b/pkgs/by-name/dr/dragmap/boost-iterator-range.patch
@@ -0,0 +1,12 @@
+diff --git a/src/lib/map/Mapper.cpp b/src/lib/map/Mapper.cpp
+index 6eaa2c5..781988c 100644
+--- a/src/lib/map/Mapper.cpp
++++ b/src/lib/map/Mapper.cpp
+@@ -22,6 +22,7 @@
+ //#include "common/Crc32Hw.hpp"
+ #include "common/DragenLogger.hpp"
+ #include "map/Mapper.hpp"
++#include <boost/range/iterator_range.hpp>
+ 
+ namespace dragenos {
+ namespace map {
diff --git a/pkgs/by-name/dr/dragmap/package.nix b/pkgs/by-name/dr/dragmap/package.nix
index 9f61cbb3e5e4..2408b01be91d 100644
--- a/pkgs/by-name/dr/dragmap/package.nix
+++ b/pkgs/by-name/dr/dragmap/package.nix
@@ -33,6 +33,10 @@ stdenv.mkDerivation (finalAttrs: {
     # Add missing include cstdint.  Upstream does not accept PR. Issue opened at
     # https://github.com/Illumina/DRAGMAP/issues/63
     ./cstdint.patch
+
+    # Missing import in Mapper.cpp
+    # Issue opened upstream https://github.com/Illumina/DRAGMAP/pull/66
+    ./boost-iterator-range.patch
   ];
 
   env = {
@@ -53,7 +57,7 @@ stdenv.mkDerivation (finalAttrs: {
   # Tests are launched by default from makefile
   doCheck = false;
 
-  meta = with lib; {
+  meta = {
     description = "Open Source version of Dragen mapper for genomics";
     mainProgram = "dragen-os";
     longDescription = ''
@@ -61,8 +65,10 @@ stdenv.mkDerivation (finalAttrs: {
       which the Illumina team created to procude the same results as their
       proprietary DRAGEN hardware.
     '';
-    license = licenses.gpl3;
-    platforms = platforms.unix;
-    maintainers = with maintainers; [ apraga ];
+    homepage = "https://github.com/Illumina/DRAGMAP";
+    changelog = "https://github.com/Illumina/DRAGMAP/releases/tag/${finalAttrs.version}";
+    license = lib.licenses.gpl3;
+    platforms = [ "x86_64-linux" ];
+    maintainers = with lib.maintainers; [ apraga ];
   };
 })