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rustPlatform.importCargoLock { lockFile = ./Cargo.lock; }; + + postPatch = '' + ln -s ${./Cargo.lock} Cargo.lock + ''; + + buildAndTestSubdir = "packages/pyo3"; + + nativeBuildInputs = [ rustPlatform.cargoSetupHook ]; + + buildInputs = [ libiconv ]; + + build-system = [ rustPlatform.maturinBuildHook ]; + + pythonImportsCheck = [ "graspologic_native" ]; + + nativeCheckInputs = [ pytestCheckHook ]; + + preCheck = '' + cd packages/pyo3 + ''; + + meta = with lib; { + description = "Library of rust components to add additional capability to graspologic a python library for intelligently building networks and network embeddings, and for analyzing connected data"; + homepage = "https://github.com/graspologic-org/graspologic-native"; + license = licenses.mit; + maintainers = with maintainers; [ natsukium ]; + }; +} diff --git a/pkgs/development/python-modules/graspologic/default.nix b/pkgs/development/python-modules/graspologic/default.nix index 74e7442f0e41..c6a72fc6ee34 100644 --- a/pkgs/development/python-modules/graspologic/default.nix +++ b/pkgs/development/python-modules/graspologic/default.nix @@ -1,18 +1,28 @@ { lib, + stdenv, buildPythonPackage, - isPy27, fetchFromGitHub, - setuptools, + poetry-core, + poetry-dynamic-versioning, pytestCheckHook, - pytest-cov, + testfixtures, + anytree, + beartype, + gensim, + graspologic-native, hyppo, + joblib, matplotlib, networkx, numpy, + pot, scikit-learn, scipy, seaborn, + statsmodels, + typing-extensions, + umap-learn, }: buildPythonPackage rec { @@ -20,30 +30,44 @@ buildPythonPackage rec { version = "3.4.1"; pyproject = true; - disabled = isPy27; - src = fetchFromGitHub { - owner = "microsoft"; + owner = "graspologic-org"; repo = "graspologic"; rev = "refs/tags/v${version}"; hash = "sha256-taX/4/uCQXW7yFykVHY78hJIGThEIycHwrEOZ3h1LPY="; }; - nativeBuildInputs = [ setuptools ]; + build-system = [ + poetry-core + poetry-dynamic-versioning + ]; - propagatedBuildInputs = [ + pythonRelaxDeps = [ "scipy" ]; + + dependencies = [ + anytree + beartype + gensim + graspologic-native hyppo + joblib matplotlib networkx numpy + pot scikit-learn scipy seaborn + statsmodels + typing-extensions + umap-learn ]; + env.NUMBA_CACHE_DIR = "$TMPDIR"; + nativeCheckInputs = [ pytestCheckHook - pytest-cov + testfixtures ]; pytestFlagsArray = [ "tests" @@ -52,12 +76,16 @@ buildPythonPackage rec { ]; disabledTests = [ "gridplot_outputs" ]; + disabledTestPaths = lib.optionals stdenv.hostPlatform.isDarwin [ + # SIGABRT + "tests/test_plot.py" + "tests/test_plot_matrix.py" + ]; + meta = with lib; { - homepage = "https://graspologic.readthedocs.io"; + homepage = "https://graspologic-org.github.io/graspologic"; description = "Package for graph statistical algorithms"; - license = licenses.asl20; # changing to `licenses.mit` in next release + license = licenses.mit; maintainers = with maintainers; [ bcdarwin ]; - # graspologic-native is not available - broken = true; }; } diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index e52d5625b74a..ad6e5882672b 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -5219,6 +5219,8 @@ self: super: with self; { graspologic = callPackage ../development/python-modules/graspologic { }; + graspologic-native = callPackage ../development/python-modules/graspologic-native { }; + greatfet = callPackage ../development/python-modules/greatfet { }; greeclimate = callPackage ../development/python-modules/greeclimate { };