From d01163e51d693a548f13a8d3a6e5657fd77c8f0c Mon Sep 17 00:00:00 2001
From: Doron Behar <doron.behar@gmail.com>
Date: Sun, 14 Sep 2025 01:00:07 +0300
Subject: [PATCH] python313Packages.freud: 3.3.1 -> 3.4.0

Diff: https://github.com/glotzerlab/freud/compare/v3.3.1...v3.4.0

Changelog: https://github.com/glotzerlab/freud/blob/v3.4.0/ChangeLog.md
---
 .../python-modules/freud/default.nix          | 46 ++++++++-----------
 1 file changed, 19 insertions(+), 27 deletions(-)

diff --git a/pkgs/development/python-modules/freud/default.nix b/pkgs/development/python-modules/freud/default.nix
index 31d68996bfbf..3735dab43ff8 100644
--- a/pkgs/development/python-modules/freud/default.nix
+++ b/pkgs/development/python-modules/freud/default.nix
@@ -2,22 +2,25 @@
   lib,
   buildPythonPackage,
   fetchFromGitHub,
-  fetchpatch,
 
   # build-system
-  cmake,
+  scikit-build-core,
   cython,
   oldest-supported-numpy,
-  scikit-build,
-  setuptools,
+
+  # nativeBuildInputs
+  cmake,
+  ninja,
 
   # buildInputs
-  tbb,
+  tbb_2022,
+  nanobind,
 
   # dependencies
   numpy,
   rowan,
   scipy,
+  parsnip,
 
   # tests
   pytestCheckHook,
@@ -29,25 +32,17 @@
 
 buildPythonPackage rec {
   pname = "freud";
-  version = "3.3.1";
+  version = "3.4.0";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "glotzerlab";
     repo = "freud";
     tag = "v${version}";
-    hash = "sha256-3THoGPjfaDy2s96+Oaf1f2SDzxTaqRDQlNa3gZ/ytUU=";
+    hash = "sha256-JX3pbzNTj85UTAtWYnDRvtJSjS27qgY/vitaAjmXbjA=";
     fetchSubmodules = true;
   };
 
-  patches = [
-    # https://github.com/glotzerlab/freud/issues/1269
-    (fetchpatch {
-      url = "https://github.com/glotzerlab/freud/commit/8f636e3815737945e45da5b9996b5f69df07c9a5.patch";
-      hash = "sha256-PLorRrYj16oBWHYzXDq62kECzVTtyr+1Z20DJqTkXxg=";
-    })
-  ];
-
   # Because we prefer to not `leaveDotGit`, we need to fool upstream into
   # thinking we left the .git files in the submodules, so cmake won't think we
   # didn't initialize them. Upstream doesn't support using the system wide
@@ -59,21 +54,26 @@ buildPythonPackage rec {
   '';
 
   build-system = [
-    cmake
+    scikit-build-core
     cython
     oldest-supported-numpy
-    scikit-build
-    setuptools
+  ];
+
+  nativeBuildInputs = [
+    cmake
+    ninja
   ];
   dontUseCmakeConfigure = true;
   buildInputs = [
-    tbb
+    tbb_2022
+    nanobind
   ];
 
   dependencies = [
     numpy
     rowan
     scipy
+    parsnip
   ];
 
   nativeCheckInputs = [
@@ -82,14 +82,6 @@ buildPythonPackage rec {
     matplotlib
     sympy
   ];
-  disabledTests = [
-    # https://github.com/glotzerlab/freud/issues/961
-    #
-    # For x86_64-linux, see:
-    #
-    # https://github.com/glotzerlab/freud/issues/961#issuecomment-2553344968
-    "test_docstring"
-  ];
   # On top of cd $out due to https://github.com/NixOS/nixpkgs/issues/255262 ,
   # we need to also copy the tests because otherwise pytest won't find them.
   preCheck = ''