diff --git a/pkgs/by-name/du/dune3d/package.nix b/pkgs/by-name/du/dune3d/package.nix
index 5b59f7197b63..28f92f4def31 100644
--- a/pkgs/by-name/du/dune3d/package.nix
+++ b/pkgs/by-name/du/dune3d/package.nix
@@ -37,6 +37,7 @@ stdenv.mkDerivation (finalAttrs: {
   };
 
   nativeBuildInputs = [
+    cmake
     gobject-introspection
     meson
     ninja
@@ -46,8 +47,9 @@ stdenv.mkDerivation (finalAttrs: {
   ]
   ++ lib.optional stdenv.hostPlatform.isDarwin desktopToDarwinBundle;
 
+  dontUseCmakeConfigure = true;
+
   buildInputs = [
-    cmake
     eigen
     glm
     gtkmm4
diff --git a/pkgs/by-name/dy/dynein/package.nix b/pkgs/by-name/dy/dynein/package.nix
index 8cc5eaf187d7..114690581a32 100644
--- a/pkgs/by-name/dy/dynein/package.nix
+++ b/pkgs/by-name/dy/dynein/package.nix
@@ -23,11 +23,13 @@ rustPlatform.buildRustPackage rec {
 
   cargoHash = "sha256-PA7Hvn+vYBD80thkIamwOhw4lJWAmU/TQBnwJro4r7c=";
 
-  nativeBuildInputs = [ pkg-config ];
+  nativeBuildInputs = [
+    cmake
+    pkg-config
+  ];
 
   buildInputs = [
     openssl
-    cmake
   ];
 
   preBuild = ''
diff --git a/pkgs/by-name/en/enzyme/package.nix b/pkgs/by-name/en/enzyme/package.nix
index 64bbf9b095c0..1485b1364f3b 100644
--- a/pkgs/by-name/en/enzyme/package.nix
+++ b/pkgs/by-name/en/enzyme/package.nix
@@ -23,8 +23,8 @@ llvmPackages.stdenv.mkDerivation rec {
   llvm = llvmPackages.llvm;
   clang = llvmPackages.clang-unwrapped;
 
+  nativeBuildInputs = [ cmake ];
   buildInputs = [
-    cmake
     git
     llvm
     clang
diff --git a/pkgs/by-name/mi/mission-center/package.nix b/pkgs/by-name/mi/mission-center/package.nix
index bfdd8f48fab6..b550d756f38e 100644
--- a/pkgs/by-name/mi/mission-center/package.nix
+++ b/pkgs/by-name/mi/mission-center/package.nix
@@ -5,7 +5,6 @@
   fetchFromGitLab,
   rustPlatform,
   symlinkJoin,
-
   # nativeBuildInputs
   blueprint-compiler,
   cargo,
@@ -18,7 +17,6 @@
   python3,
   rustc,
   wrapGAppsHook4,
-
   # buildInputs
   appstream-glib,
   cairo,
@@ -37,12 +35,10 @@
   sqlite,
   udev,
   wayland,
-
   # magpie wrapper
   addDriverRunpath,
   libGL,
   vulkan-loader,
-
   versionCheckHook,
 }:
 
@@ -129,6 +125,7 @@ stdenv.mkDerivation (finalAttrs: {
   };
 
   nativeBuildInputs = [
+    cmake
     addDriverRunpath
     blueprint-compiler
     cargo
@@ -149,7 +146,6 @@ stdenv.mkDerivation (finalAttrs: {
     appstream-glib
     blueprint-compiler
     cairo
-    cmake
     dbus
     desktop-file-utils
     gdk-pixbuf
diff --git a/pkgs/by-name/pa/papilo/package.nix b/pkgs/by-name/pa/papilo/package.nix
index b1792c608182..5ff6678a2a8b 100644
--- a/pkgs/by-name/pa/papilo/package.nix
+++ b/pkgs/by-name/pa/papilo/package.nix
@@ -38,7 +38,6 @@ stdenv.mkDerivation (finalAttrs: {
 
   buildInputs = [
     boost
-    cmake
     onetbb
   ];