diff --git a/pkgs/by-name/mi/minimap2/package.nix b/pkgs/by-name/mi/minimap2/package.nix
index 8808db4374f7..1d5c8aa0513a 100644
--- a/pkgs/by-name/mi/minimap2/package.nix
+++ b/pkgs/by-name/mi/minimap2/package.nix
@@ -7,13 +7,13 @@
 
 stdenv.mkDerivation rec {
   pname = "minimap2";
-  version = "2.28";
+  version = "2.29";
 
   src = fetchFromGitHub {
     repo = "minimap2";
     owner = "lh3";
     rev = "v${version}";
-    sha256 = "sha256-cBl2BKgPCP/xHZW6fTH51cY9/lV/1HVLsN7a1R1Blv4=";
+    sha256 = "sha256-AIcxlEDHZOZgUOUZLRwmm5yuuzKHNz21rrSXAWGJEHk=";
   };
 
   buildInputs = [ zlib ];