From 2e4652d29c0e0c6758d812c1d6ff5cffacefe7b2 Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Sun, 1 Mar 2026 00:10:26 +0000
Subject: [PATCH 1/3] python3Packages.templateflow: cleanup, fix

---
 .../python-modules/templateflow/default.nix   | 32 ++++++++++++-------
 1 file changed, 20 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/python-modules/templateflow/default.nix b/pkgs/development/python-modules/templateflow/default.nix
index 46f042389249..66c9b53f47ee 100644
--- a/pkgs/development/python-modules/templateflow/default.nix
+++ b/pkgs/development/python-modules/templateflow/default.nix
@@ -2,16 +2,23 @@
   lib,
   buildPythonPackage,
   fetchFromGitHub,
-  setuptools-scm,
-  hatchling,
+
+  # build-system
   hatch-vcs,
+  hatchling,
+  setuptools-scm,
+
+  writableTmpDirAsHomeHook,
+
+  # dependenices
   nipreps-versions,
+  platformdirs,
   pybids,
   requests,
   tqdm,
 }:
 
-buildPythonPackage rec {
+buildPythonPackage (finalAttrs: {
   pname = "templateflow";
   version = "25.1.1";
   pyproject = true;
@@ -19,18 +26,23 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "templateflow";
     repo = "python-client";
-    tag = version;
+    tag = finalAttrs.version;
     hash = "sha256-QkscrnSURUnZp+42dtVK++EHbHklmWRixpDRhNhHM50=";
   };
 
   build-system = [
-    setuptools-scm
-    hatchling
     hatch-vcs
+    hatchling
+    setuptools-scm
+  ];
+
+  nativeBuildInputs = [
+    writableTmpDirAsHomeHook
   ];
 
   dependencies = [
     nipreps-versions
+    platformdirs
     pybids
     requests
     tqdm
@@ -38,17 +50,13 @@ buildPythonPackage rec {
 
   doCheck = false; # most tests try to download data
 
-  postFixup = ''
-    export HOME=$(mktemp -d)
-  '';
-
   pythonImportsCheck = [ "templateflow" ];
 
   meta = {
     homepage = "https://templateflow.org/python-client";
     description = "Python API to query TemplateFlow via pyBIDS";
-    changelog = "https://github.com/templateflow/python-client/releases/tag/${src.tag}";
+    changelog = "https://github.com/templateflow/python-client/releases/tag/${finalAttrs.src.tag}";
     license = lib.licenses.asl20;
     maintainers = with lib.maintainers; [ bcdarwin ];
   };
-}
+})

From 734bc969011fa3f50b2d4e66912a527ab1fa5543 Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Sun, 1 Mar 2026 00:10:15 +0000
Subject: [PATCH 2/3] python3Packages.niworks: cleanup

---
 .../development/python-modules/niworkflows/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/python-modules/niworkflows/default.nix b/pkgs/development/python-modules/niworkflows/default.nix
index 08f83f95798b..b53adb8324f8 100644
--- a/pkgs/development/python-modules/niworkflows/default.nix
+++ b/pkgs/development/python-modules/niworkflows/default.nix
@@ -38,7 +38,7 @@
   writableTmpDirAsHomeHook,
 }:
 
-buildPythonPackage rec {
+buildPythonPackage (finalAttrs: {
   pname = "niworkflows";
   version = "1.14.4";
   pyproject = true;
@@ -46,7 +46,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "nipreps";
     repo = "niworkflows";
-    tag = version;
+    tag = finalAttrs.version;
     hash = "sha256-AMUOiIL33kcJtlKT+L5QwcUh8mBBkf80uzOQZFKDauo=";
   };
 
@@ -82,7 +82,7 @@ buildPythonPackage rec {
     transforms3d
   ];
 
-  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = finalAttrs.version;
 
   nativeCheckInputs = [
     pytest-cov-stub
@@ -115,8 +115,8 @@ buildPythonPackage rec {
     description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
     mainProgram = "niworkflows-boldref";
     homepage = "https://github.com/nipreps/niworkflows";
-    changelog = "https://github.com/nipreps/niworkflows/blob/${src.tag}/CHANGES.rst";
+    changelog = "https://github.com/nipreps/niworkflows/blob/${finalAttrs.src.tag}/CHANGES.rst";
     license = lib.licenses.asl20;
     maintainers = with lib.maintainers; [ bcdarwin ];
   };
-}
+})

From 7d851d9b3ab0b69088bc860d830dc67f238984ab Mon Sep 17 00:00:00 2001
From: "R. Ryantm" <ryantm-bot@ryantm.com>
Date: Sat, 28 Feb 2026 20:20:34 +0000
Subject: [PATCH 3/3] python3Packages.nilearn: 0.13.0 -> 0.13.1

---
 pkgs/development/python-modules/nilearn/default.nix | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/python-modules/nilearn/default.nix b/pkgs/development/python-modules/nilearn/default.nix
index 26e876e62245..1ce921415d26 100644
--- a/pkgs/development/python-modules/nilearn/default.nix
+++ b/pkgs/development/python-modules/nilearn/default.nix
@@ -23,16 +23,16 @@
   numpydoc,
 }:
 
-buildPythonPackage rec {
+buildPythonPackage (finalAttrs: {
   pname = "nilearn";
-  version = "0.13.0";
+  version = "0.13.1";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "nilearn";
     repo = "nilearn";
-    tag = version;
-    hash = "sha256-q+glPYxnB3Nd1DtaTzdSEJtgRtRhW+RfZmAeAUL6zX4=";
+    tag = finalAttrs.version;
+    hash = "sha256-AStjr+rQoUU4WjKbn+OgT+T+xQ3cTjkKxgF6jX3SX64=";
   };
 
   postPatch = ''
@@ -69,8 +69,8 @@ buildPythonPackage rec {
   meta = {
     description = "Module for statistical learning on neuroimaging data";
     homepage = "https://nilearn.github.io";
-    changelog = "https://github.com/nilearn/nilearn/releases/tag/${src.tag}";
+    changelog = "https://github.com/nilearn/nilearn/releases/tag/${finalAttrs.src.tag}";
     license = lib.licenses.bsd3;
     maintainers = with lib.maintainers; [ GaetanLepage ];
   };
-}
+})