diff --git a/pkgs/applications/science/chemistry/autodock-vina/default.nix b/pkgs/by-name/au/autodock-vina/package.nix
similarity index 100%
rename from pkgs/applications/science/chemistry/autodock-vina/default.nix
rename to pkgs/by-name/au/autodock-vina/package.nix
diff --git a/pkgs/applications/science/chemistry/autodock-vina/python-bindings.nix b/pkgs/by-name/au/autodock-vina/python-bindings.nix
similarity index 100%
rename from pkgs/applications/science/chemistry/autodock-vina/python-bindings.nix
rename to pkgs/by-name/au/autodock-vina/python-bindings.nix
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a7ccbe0f949d..6f0f4456983b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -10814,8 +10814,6 @@ with pkgs;
     scalapack = scalapack-ilp64;
   };
 
-  autodock-vina = callPackage ../applications/science/chemistry/autodock-vina { };
-
   pdb2pqr = with python3Packages; toPythonApplication pdb2pqr;
 
   quantum-espresso = callPackage ../applications/science/chemistry/quantum-espresso {
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index fe7934517d71..47db72e8d5be 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -21124,7 +21124,7 @@ self: super: with self; {
 
   vilfo-api-client = callPackage ../development/python-modules/vilfo-api-client { };
 
-  vina = callPackage ../applications/science/chemistry/autodock-vina/python-bindings.nix { };
+  vina = callPackage ../by-name/au/autodock-vina/python-bindings.nix { };
 
   vincenty = callPackage ../development/python-modules/vincenty { };