From a6efe42fe09100bbffd3a00ad1b61d464e4a7e25 Mon Sep 17 00:00:00 2001
From: Maksym Balatsko <maksym.balatsko-ext@arista.com>
Date: Sun, 1 Oct 2023 07:56:27 -0700
Subject: [PATCH] python3Packages.mne-python: 1.6.0 -> 1.6.1

---
 .../python-modules/mne-python/default.nix     | 73 ++++++++++++-------
 1 file changed, 46 insertions(+), 27 deletions(-)

diff --git a/pkgs/development/python-modules/mne-python/default.nix b/pkgs/development/python-modules/mne-python/default.nix
index 8a85f487d2d2..c1e1a9561e24 100644
--- a/pkgs/development/python-modules/mne-python/default.nix
+++ b/pkgs/development/python-modules/mne-python/default.nix
@@ -1,66 +1,84 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
+, setuptools-scm
 , numpy
 , scipy
 , pytestCheckHook
 , pytest-timeout
-, h5py
+, pytest-harvest
 , matplotlib
-, nibabel
-, pandas
-, scikit-learn
 , decorator
 , jinja2
 , pooch
 , tqdm
-, setuptools
+, packaging
+, importlib-resources
+, lazy-loader
+, h5io
+, pymatreader
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "mne-python";
-  version = "1.6.0";
-  format = "setuptools";
+  version = "1.6.1";
+  pyproject = true;
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchFromGitHub {
     owner = "mne-tools";
-    repo = pname;
+    repo = "mne-python";
     rev = "refs/tags/v${version}";
-    hash = "sha256-OoaXNHGL2svOpNL5GHcVRfQc9GxIRpZRhpZ5Hi1JTzM=";
+    hash = "sha256-U1aMqcUZ3BcwqwOYh/qfG5PhacwBVioAgNc52uaoJL0";
   };
 
-  propagatedBuildInputs = [
-    decorator
-    jinja2
-    matplotlib
-    numpy
-    pooch
-    scipy
+  postPatch = ''
+    substituteInPlace pyproject.toml  \
+      --replace "--cov-report=" ""  \
+      --replace "--cov-branch" ""
+  '';
+
+  nativeBuildInputs = [
     setuptools
-    tqdm
+    setuptools-scm
   ];
 
+  propagatedBuildInputs = [
+    numpy
+    scipy
+    matplotlib
+    tqdm
+    pooch
+    decorator
+    packaging
+    jinja2
+    lazy-loader
+  ] ++ lib.optionals (pythonOlder "3.9") [
+    importlib-resources
+  ];
+
+  passthru.optional-dependencies = {
+    hdf5 = [
+      h5io
+      pymatreader
+    ];
+  };
+
   nativeCheckInputs = [
-    h5py
-    nibabel
-    pandas
     pytestCheckHook
-    scikit-learn
     pytest-timeout
-  ];
+    pytest-harvest
+  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
 
   preCheck = ''
-    export HOME=$TMP
+    export HOME=$(mktemp -d)
     export MNE_SKIP_TESTING_DATASET_TESTS=true
     export MNE_SKIP_NETWORK_TESTS=1
   '';
 
-  # All tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated
-  doCheck = false;
-
   pythonImportsCheck = [
     "mne"
   ];
@@ -68,6 +86,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Magnetoencephelography and electroencephalography in Python";
     homepage = "https://mne.tools";
+    changelog = "https://mne.tools/stable/changes/v${version}.html";
     license = licenses.bsd3;
     maintainers = with maintainers; [ bcdarwin ];
   };