treewide(java-users): clean callPackage overrides, by-name some

**This commit should cause no rebuilds.**

# Moving Java overrides out of all-packages

All usages of this pattern have been moved to
'let ... in' blocks.

Patterns I searched for:
* `jdk =`
* `jdk_headless =`
* `jre =`
* `jfx =`

The `jing` alias has been moved to aliases.nix, so
update the usage of `jing` in `xmloscopy` to
`jing-trang`.

cassandra was ignored because that derivation
involves code generation.

I ignored grails, because jdk is set to null by
default by an override in all-packages.nix. That
package would need a slightly larger refactor to
deal with.

Packages with a *-native variant were ignored because
those would need to be refactored.

jetbrains was ignored because that might be a special case?

I ignored virtualbox, because I did not want
to touch the usages of the pattern for other
dependencies.

pkgs/development/libraries/java/cup/default.nix

@@ -1,57 +0,0 @@
-{
-  lib,
-  stdenv,
-  fetchurl,
-  ant,
-  jdk,
-  makeWrapper,
-  stripJavaArchivesHook,
-}:
-
-stdenv.mkDerivation (finalAttrs: {
-  pname = "java-cup";
-  version = "11b-20160615";
-
-  src = fetchurl {
-    url = "http://www2.cs.tum.edu/projects/cup/releases/java-cup-src-${finalAttrs.version}.tar.gz";
-    hash = "sha256-4OdzYG5FzhqorROD5jk9U+2dzyhh5D76gZT1Z+kdv/o=";
-  };
-
-  sourceRoot = ".";
-
-  patches = [ ./javacup-0.11b_beta20160615-build-xml-git.patch ];
-
-  nativeBuildInputs = [
-    ant
-    jdk
-    makeWrapper
-    stripJavaArchivesHook
-  ];
-
-  buildPhase = ''
-    runHook preBuild
-    ant
-    runHook postBuild
-  '';
-
-  installPhase = ''
-    runHook preInstall
-
-    install -Dm644 dist/java-cup-11b.jar -t $out/share/java-cup
-    install -Dm644 dist/java-cup-11b-runtime.jar -t $out/share/java
-
-    makeWrapper ${jdk.jre}/bin/java $out/bin/javacup \
-        --add-flags "-jar $out/share/java-cup/java-cup-11b.jar"
-
-    runHook postInstall
-  '';
-
-  meta = {
-    description = "LALR parser generator for Java";
-    homepage = "http://www2.cs.tum.edu/projects/cup/";
-    license = lib.licenses.mit;
-    mainProgram = "javacup";
-    maintainers = [ lib.maintainers.romildo ];
-    platforms = lib.platforms.all;
-  };
-})

pkgs/development/libraries/java/cup/javacup-0.11b_beta20160615-build-xml-git.patch

@@ -1,38 +0,0 @@
---- javacup/build.xml.orig	2016-06-15 07:10:15.000000000 -0300
-+++ javacup/build.xml	2016-07-17 08:46:46.632722844 -0300
-@@ -21,26 +21,6 @@
-     <mkdir dir="${dist}" />
-     <loadfile property="cupversion" srcFile="version.txt" failonerror="false" />
-     <property name="cupversion" value="custombuild" unless:set="cupversion"/>
--    <exec executable="git" outputproperty="gitversion">
--      <arg value="log"/>
--      <arg value="-1"/>
--      <arg value="--format=%h"/>
--    </exec>
--    <exec executable="git" outputproperty="changed">
--      <arg value="status"/>
--      <arg value="--porcelain"/>
--      <redirector>
--	<outputfilterchain>
--	<linecontainsregexp>
--	  <regexp pattern='^M.*'/>
--	</linecontainsregexp>
--	<tokenfilter>
--	  <replaceregex pattern=".*" replace="modifications based on "/>
--	</tokenfilter>
--	</outputfilterchain>
--	</redirector>
--    </exec>
--    <property name="svnversion">${changed}${gitversion}</property>
-   </target>
- 
-   <property environment="env" />
-@@ -79,7 +59,7 @@
-     <copy todir="${java}"><fileset dir="${src}"></fileset></copy>
-     <replace file="${java}/java_cup/version.java"
-        token="+ version_str"
--       value='+ "v0.11b ${cupversion} (GIT ${svnversion})"'>
-+       value='+ "v0.11b ${cupversion}"'>
-     </replace>
-     <javac srcdir="${java}" destdir="${classes}" verbose="off" listfiles="off" debug="on" source="1.8" target="1.8">
-       <classpath refid="libraries"/>

pkgs/development/libraries/java/libmatthew-java/default.nix

@@ -1,25 +0,0 @@
-{
-  lib,
-  stdenv,
-  fetchurl,
-  jdk,
-}:
-
-stdenv.mkDerivation rec {
-  pname = "libmatthew-java";
-  version = "0.8";
-
-  src = fetchurl {
-    url = "https://src.fedoraproject.org/repo/pkgs/libmatthew-java/libmatthew-java-${version}.tar.gz/8455b8751083ce25c99c2840609271f5/libmatthew-java-${version}.tar.gz";
-    sha256 = "1yldkhsdzm0a41a0i881bin2jklhp85y3ah245jd6fz3npcx7l85";
-  };
-  JAVA_HOME = jdk;
-  PREFIX = "\${out}";
-  buildInputs = [ jdk ];
-
-  meta = with lib; {
-    platforms = platforms.linux;
-    maintainers = [ maintainers.sander ];
-    license = licenses.mit;
-  };
-}