From cbd45bf5a3ade6c7e03c6a5235942d5e6d467bbf Mon Sep 17 00:00:00 2001
From: Sergei Trofimovich <slyich@gmail.com>
Date: Thu, 25 Jan 2024 19:24:52 +0000
Subject: [PATCH 1/2] whisper: fix `gcc-13` build failure

Without the change build fails on `master` against `gcc-13` as
https://hydra.nixos.org/build/246505636:

    mapper/../common/defs.h:53:9: error: 'uint32_t' does not name a type
       53 | typedef uint32_t ref_pos_t;
          |         ^~~~~~~~
    mapper/../common/defs.h:35:1: note: 'uint32_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
       34 | #include <string>
      +++ |+#include <cstdint>
---
 .../applications/science/biology/whisper/default.nix | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/science/biology/whisper/default.nix b/pkgs/applications/science/biology/whisper/default.nix
index 4d74ea981098..92df2ed7175c 100644
--- a/pkgs/applications/science/biology/whisper/default.nix
+++ b/pkgs/applications/science/biology/whisper/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchFromGitHub, fetchurl }:
+{ lib, stdenv, fetchFromGitHub, fetchpatch, fetchurl }:
 
 stdenv.mkDerivation rec {
   pname = "whisper";
@@ -11,6 +11,16 @@ stdenv.mkDerivation rec {
     sha256 = "0wpx1w1mar2d6zq2v14vy6nn896ds1n3zshxhhrrj5d528504iyw";
   };
 
+  patches = [
+    # gcc-13 compatibility fixes:
+    #   https://github.com/refresh-bio/Whisper/pull/17
+    (fetchpatch {
+      name = "gcc-13.patch";
+      url = "https://github.com/refresh-bio/Whisper/commit/d67e110dd6899782e4687188f6b432494315b0b4.patch";
+      hash = "sha256-Z8GrkUMIKO/ccEdwulQh+WUox3CEckr6NgoBSzYvfuw=";
+    })
+  ];
+
   preConfigure = ''
     cd src
 

From 4508debde5ea34cb085fe23c252688495b28e93a Mon Sep 17 00:00:00 2001
From: Sergei Trofimovich <slyich@gmail.com>
Date: Thu, 25 Jan 2024 19:27:12 +0000
Subject: [PATCH 2/2] whisper: enable parallel building

---
 pkgs/applications/science/biology/whisper/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/applications/science/biology/whisper/default.nix b/pkgs/applications/science/biology/whisper/default.nix
index 92df2ed7175c..4cc211547610 100644
--- a/pkgs/applications/science/biology/whisper/default.nix
+++ b/pkgs/applications/science/biology/whisper/default.nix
@@ -28,6 +28,8 @@ stdenv.mkDerivation rec {
     sed -i 's/ -static / /' makefile
   '';
 
+  enableParallelBuilding = true;
+
   installPhase = ''
     runHook preInstall
     install -Dt $out/bin whisper whisper-index