diff --git a/pkgs/applications/science/biology/fastp/default.nix b/pkgs/applications/science/biology/fastp/default.nix index c4cae59d1c4e..2e44113f40ef 100644 --- a/pkgs/applications/science/biology/fastp/default.nix +++ b/pkgs/applications/science/biology/fastp/default.nix @@ -1,20 +1,23 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub , zlib +, libdeflate +, isa-l }: stdenv.mkDerivation rec { pname = "fastp"; - version = "0.22.0"; + version = "0.23.1"; src = fetchFromGitHub { owner = "OpenGene"; repo = "fastp"; rev = "v${version}"; - sha256 = "sha256-XR76hNz7iGXQYSBbBandHZ+oU3wyTf1AKlu9Xeq/GyE="; + sha256 = "sha256-vRJlNtg2JabBAUaX91Y04z8MdyxEnreBAlIHn7VB+u4="; }; - buildInputs = [ zlib ]; + buildInputs = [ zlib libdeflate isa-l ]; installPhase = '' install -D fastp $out/bin/fastp diff --git a/pkgs/development/libraries/isa-l/default.nix b/pkgs/development/libraries/isa-l/default.nix new file mode 100644 index 000000000000..1440065969b2 --- /dev/null +++ b/pkgs/development/libraries/isa-l/default.nix @@ -0,0 +1,27 @@ +{ lib, stdenv, fetchFromGitHub, autoreconfHook, nasm }: + +stdenv.mkDerivation rec { + pname = "isa-l"; + version = "2.30.0"; + + src = fetchFromGitHub { + owner = "intel"; + repo = "isa-l"; + rev = "v${version}"; + sha256 = "sha256-AAuSdDQfDW4QFRu0jHwCZ+ZCSjoVqlQiSW1OOFye1Rs="; + }; + + nativeBuildInputs = [ nasm autoreconfHook ]; + + preConfigure = '' + export AS=nasm + ''; + + meta = with lib; { + description = "A collection of optimised low-level functions targeting storage applications"; + license = licenses.bsd3; + homepage = "https://github.com/intel/isa-l"; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 2876e328f0e2..5cecb881279e 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -15547,6 +15547,8 @@ with pkgs; hci = callPackage ../development/tools/continuous-integration/hci { }; + isa-l = callPackage ../development/libraries/isa-l { }; + niv = lib.getBin (haskell.lib.justStaticExecutables haskellPackages.niv); ormolu = haskellPackages.ormolu.bin;