From 935c9cc8793a9b4d19eb2887bf5e609d8a8615c9 Mon Sep 17 00:00:00 2001
From: Bruno Rodrigues <bruno@brodrigues.co>
Date: Thu, 11 Sep 2025 18:52:01 +0200
Subject: [PATCH] python3Packages.biocutils: init at 0.2.3

---
 .../python-modules/biocutils/default.nix      | 48 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 50 insertions(+)
 create mode 100644 pkgs/development/python-modules/biocutils/default.nix

diff --git a/pkgs/development/python-modules/biocutils/default.nix b/pkgs/development/python-modules/biocutils/default.nix
new file mode 100644
index 000000000000..4c1a87281cf1
--- /dev/null
+++ b/pkgs/development/python-modules/biocutils/default.nix
@@ -0,0 +1,48 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pytestCheckHook,
+  pytest-cov-stub,
+  setuptools,
+  setuptools-scm,
+  scipy,
+  pandas,
+  numpy,
+}:
+
+buildPythonPackage rec {
+  pname = "biocutils";
+  version = "0.2.3";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "BiocPy";
+    repo = "BiocUtils";
+    tag = "${version}";
+    hash = "sha256-4LzXBP/cp+nqIOM5QZIa1QptkSfv3fqdACHEHjJUtsw=";
+  };
+
+  build-system = [
+    setuptools
+    setuptools-scm
+  ];
+
+  dependencies = [ numpy ];
+
+  nativeCheckInputs = [
+    pytest-cov-stub
+    pytestCheckHook
+    pandas
+    scipy
+  ];
+
+  pythonImportsCheck = [ "biocutils" ];
+
+  meta = {
+    description = "Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R";
+    homepage = "https://github.com/BiocPy/BiocUtils";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ b-rodrigues ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 9e7bfc8df7f1..1b0f9394e096 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1911,6 +1911,8 @@ self: super: with self; {
 
   binsync = callPackage ../development/python-modules/binsync { };
 
+  biocutils = callPackage ../development/python-modules/biocutils { };
+
   biom-format = callPackage ../development/python-modules/biom-format { };
 
   biopandas = callPackage ../development/python-modules/biopandas { };