From 29da54e3707f737aa8bda463bf2a4ff17b9edf34 Mon Sep 17 00:00:00 2001
From: chemonke <chemonke@pm.me>
Date: Sun, 17 May 2026 12:56:22 +0200
Subject: [PATCH] python3Packages.biopandas: fix numpy 2.4 compatibility

---
 pkgs/development/python-modules/biopandas/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/python-modules/biopandas/default.nix b/pkgs/development/python-modules/biopandas/default.nix
index 98de452073da..a0359051aa20 100644
--- a/pkgs/development/python-modules/biopandas/default.nix
+++ b/pkgs/development/python-modules/biopandas/default.nix
@@ -22,6 +22,12 @@ buildPythonPackage rec {
     hash = "sha256-dUeGjDDz9VA1NrFLGKy0ebaa+MU4c1tHi5YYkAspLRk=";
   };
 
+  postPatch = ''
+    substituteInPlace biopandas/mmtf/pandas_mmtf.py --replace-fail \
+      'int(np.argwhere(np.array(model_indices) > ch_idx)[0]) + 1' \
+      'int(np.argwhere(np.array(model_indices) > ch_idx)[0][0]) + 1'
+  '';
+
   pythonRelaxDeps = [ "looseversion" ];
 
   build-system = [ setuptools ];