diff --git a/pkgs/by-name/ap/apko/package.nix b/pkgs/by-name/ap/apko/package.nix
index 490bc6bbb4d1..e29031abb8b5 100644
--- a/pkgs/by-name/ap/apko/package.nix
+++ b/pkgs/by-name/ap/apko/package.nix
@@ -11,13 +11,13 @@
 
 buildGoModule (finalAttrs: {
   pname = "apko";
-  version = "1.2.4";
+  version = "1.2.13";
 
   src = fetchFromGitHub {
     owner = "chainguard-dev";
     repo = "apko";
     tag = "v${finalAttrs.version}";
-    hash = "sha256-y1/tkLwVW/D6KDnoO/YtW88vA+O+qfbu53Ystx0zf2Y=";
+    hash = "sha256-T074IzGgs0mDX4u5L96Xa0bGwpCLVYu3hNrN/7JzF1U=";
     # populate values that require us to use git. By doing this in postFetch we
     # can delete .git afterwards and maintain better reproducibility of the src.
     leaveDotGit = true;
@@ -29,7 +29,7 @@ buildGoModule (finalAttrs: {
       find "$out" -name .git -print0 | xargs -0 rm -rf
     '';
   };
-  vendorHash = "sha256-xAXI1qGNOhPiDWc6KQX7ThDqs67XhP+O+ideQiMG6B8=";
+  vendorHash = "sha256-Sq++amIZ5jdi/D499A8JRkr7yYPHkMXjU2yHOE8p3h4=";
 
   excludedPackages = [
     "internal/gen-jsonschema"
@@ -65,7 +65,8 @@ buildGoModule (finalAttrs: {
 
   checkFlags = [
     # requires networking (apk.chainreg.biz and dl-cdn.alpinelinux.org)
-    "-skip=TestInitDB_ChainguardDiscovery|TestFetchPackage|TestLock/apko-discover"
+    # TestSpecialModeBits fails because of sandbox setuid/setgid restrictions
+    "-skip=TestInitDB_ChainguardDiscovery|TestFetchPackage|TestLock/apko-discover|TestSpecialModeBits"
   ];
 
   postInstall =