From bd26408d75e1f23e77019c4480172962e1c6eb44 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A1szl=C3=B3=20Kupcsik?= <dev@biobits.be>
Date: Sat, 1 Nov 2025 23:18:14 +0100
Subject: [PATCH] rPackages.CNEr: patch no longer needed

This reverts commit 8c30825271977126e43b388ac0a7de401492fb05.
---
 pkgs/development/r-modules/default.nix        |  4 --
 pkgs/development/r-modules/patches/CNEr.patch | 48 -------------------
 2 files changed, 52 deletions(-)
 delete mode 100644 pkgs/development/r-modules/patches/CNEr.patch

diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index e9f7fd443a7b..6cd790c46899 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -2217,10 +2217,6 @@ let
       ];
     });
 
-    CNEr = old.CNEr.overrideAttrs (attrs: {
-      patches = [ ./patches/CNEr.patch ];
-    });
-
     covidsymptom = old.covidsymptom.overrideAttrs (attrs: {
       preConfigure = "rm R/covidsymptomdata.R";
     });
diff --git a/pkgs/development/r-modules/patches/CNEr.patch b/pkgs/development/r-modules/patches/CNEr.patch
deleted file mode 100644
index 1534ac91fd9a..000000000000
--- a/pkgs/development/r-modules/patches/CNEr.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-diff --git a/src/ucsc/common.c b/src/ucsc/common.c
-index a3fc893..e4198d3 100644
---- a/src/ucsc/common.c
-+++ b/src/ucsc/common.c
-@@ -341,7 +341,7 @@ if (count > 1)
-     }
- }
- 
--void slUniqify(void *pList, int (*compare )(const void *elem1,  const void *elem2), void (*free)())
-+void slUniqify(void *pList, int (*compare )(const void *elem1,  const void *elem2), void (*freeFunc)())
- /* Return sorted list with duplicates removed.
-  * Compare should be same type of function as slSort's compare (taking
-  * pointers to pointers to elements.  Free should take a simple
-@@ -356,7 +356,7 @@ while ((el = slPopHead(&oldList)) != NULL)
-     {
-     if ((newList == NULL) || (compare(&newList, &el) != 0))
-         slAddHead(&newList, el);
--    else if (free != NULL)
-+    else if (freeFunc != NULL)
-         free(el);
-     }
- slReverse(&newList);
-diff --git a/src/ucsc/hash.c b/src/ucsc/hash.c
-index 320b360..6ed9c70 100644
---- a/src/ucsc/hash.c
-+++ b/src/ucsc/hash.c
-@@ -611,7 +611,7 @@ if ((hash = *pHash) != NULL)
-     }
- }
- 
--void hashFreeWithVals(struct hash **pHash, void (freeFunc)())
-+void hashFreeWithVals(struct hash **pHash, void (*freeFunc)(void **))
- /* Free up hash table and all values associated with it. freeFunc is a
-  * function to free an entry, should take a pointer to a pointer to an
-  * entry. */
-diff --git a/src/ucsc/hash.h b/src/ucsc/hash.h
-index a7fc017..0d06bb9 100644
---- a/src/ucsc/hash.h
-+++ b/src/ucsc/hash.h
-@@ -244,7 +244,7 @@ void freeHashAndVals(struct hash **pHash);
- /* Free up hash table and all values associated with it.
-  * (Just calls freeMem on each hel->val) */
- 
--void hashFreeWithVals(struct hash **pHash, void (freeFunc)());
-+void hashFreeWithVals(struct hash **pHash, void (*freeFunc)(void **));
- /* Free up hash table and all values associated with it. freeFunc is a
-  * function to free an entry, should take a pointer to a pointer to an
-  * entry. */