From 8147fb683c111f40da54d245c965517bd2885b43 Mon Sep 17 00:00:00 2001
From: Sergei Trofimovich <slyich@gmail.com>
Date: Fri, 26 Nov 2021 12:56:51 +0000
Subject: [PATCH] samtools: pull upstream fix for ncurses-6.3

Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
---
 .../applications/science/biology/samtools/default.nix | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix
index 99210092a154..98b0394c35f1 100644
--- a/pkgs/applications/science/biology/samtools/default.nix
+++ b/pkgs/applications/science/biology/samtools/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }:
+{ lib, stdenv, fetchurl, fetchpatch, zlib, htslib, perl, ncurses ? null }:
 
 stdenv.mkDerivation rec {
   pname = "samtools";
@@ -9,6 +9,15 @@ stdenv.mkDerivation rec {
     sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";
   };
 
+  patches = [
+    # Pull upstream patch for ncurses-6.3 support
+    (fetchpatch {
+      name = "ncurses-6.3.patch";
+      url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";
+      sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";
+    })
+  ];
+
   nativeBuildInputs = [ perl ];
 
   buildInputs = [ zlib ncurses htslib ];