From 7bf906339f8bdda101fcb6b5aacc26d1303e8d27 Mon Sep 17 00:00:00 2001
From: Benjamin Sparks <b.sparks@alugha.com>
Date: Thu, 20 Mar 2025 21:08:40 +0100
Subject: [PATCH] platypus: drop

---
 pkgs/by-name/pl/platypus/package.nix | 53 ----------------------------
 pkgs/top-level/aliases.nix           |  1 +
 2 files changed, 1 insertion(+), 53 deletions(-)
 delete mode 100644 pkgs/by-name/pl/platypus/package.nix

diff --git a/pkgs/by-name/pl/platypus/package.nix b/pkgs/by-name/pl/platypus/package.nix
deleted file mode 100644
index 893377db79a1..000000000000
--- a/pkgs/by-name/pl/platypus/package.nix
+++ /dev/null
@@ -1,53 +0,0 @@
-{
-  lib,
-  stdenv,
-  fetchFromGitHub,
-  python27,
-  htslib,
-  zlib,
-  makeWrapper,
-}:
-
-let
-  python = python27.withPackages (ps: with ps; [ cython ]);
-
-in
-stdenv.mkDerivation {
-  pname = "platypus-unstable";
-  version = "2018-07-22";
-
-  src = fetchFromGitHub {
-    owner = "andyrimmer";
-    repo = "Platypus";
-    rev = "3e72641c69800da0cd4906b090298e654d316ee1";
-    sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw";
-  };
-
-  nativeBuildInputs = [ makeWrapper ];
-  buildInputs = [
-    htslib
-    python
-    zlib
-  ];
-
-  buildPhase = ''
-    patchShebangs .
-    make
-  '';
-
-  installPhase = ''
-    mkdir -p $out/libexec/platypus
-    cp -r ./* $out/libexec/platypus
-
-    mkdir -p $out/bin
-    makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"
-  '';
-
-  meta = with lib; {
-    description = "Platypus variant caller";
-    license = licenses.gpl3;
-    homepage = "https://github.com/andyrimmer/Platypus";
-    maintainers = with maintainers; [ jbedo ];
-    platforms = platforms.x86_64;
-  };
-}
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 712e0e62d8b5..01e4e65beec4 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -1205,6 +1205,7 @@ mapAliases {
   pio = throw "pio has been removed due to lack of upstream maintenance"; # Added 2025-01-25
   pipewire_0_2 = throw "pipewire_0_2 has been removed as it is outdated and no longer used"; # Added 2024-07-28
   pipewire-media-session = throw "pipewire-media-session is no longer maintained and has been removed. Please use Wireplumber instead.";
+  platypus = throw "platypus is unmaintained and has not merged Python3 support"; # Added 2025-03-20
   pleroma-otp = throw "'pleroma-otp' has been renamed to/replaced by 'pleroma'"; # Converted to throw 2024-10-17
   plots = throw "'plots' has been replaced by 'gnome-graphs'"; # Added 2025-02-05
   pltScheme = racket; # just to be sure