diff --git a/pkgs/development/python-modules/medvol/default.nix b/pkgs/development/python-modules/medvol/default.nix new file mode 100644 index 000000000000..79eec9d2cb64 --- /dev/null +++ b/pkgs/development/python-modules/medvol/default.nix @@ -0,0 +1,43 @@ +{ + lib, + buildPythonPackage, + pythonOlder, + fetchFromGitHub, + setuptools, + numpy, + simpleitk, +}: + +buildPythonPackage rec { + pname = "medvol"; + version = "0.0.15"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "MIC-DKFZ"; + repo = "medvol"; + rev = "v${version}"; + hash = "sha256-JOw0ODx5yuBY5FyXy9z5C/NE/iok5GwiInalgXW/1J8="; + }; + + build-system = [ setuptools ]; + + dependencies = [ + numpy + simpleitk + ]; + + doCheck = false; # no tests + + pythonImportsCheck = [ "medvol" ]; + + meta = { + description = "Wrapper for loading medical 3D image volumes such as NIFTI or NRRD images"; + homepage = "https://github.com/MIC-DKFZ/medvol"; + changelog = "https://github.com/MIC-DKFZ/MedVol/releases/tag/v${version}"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ bcdarwin ]; + }; +} diff --git a/pkgs/development/python-modules/napari-nifti/default.nix b/pkgs/development/python-modules/napari-nifti/default.nix new file mode 100644 index 000000000000..c6f2f67abb10 --- /dev/null +++ b/pkgs/development/python-modules/napari-nifti/default.nix @@ -0,0 +1,39 @@ +{ + lib, + buildPythonPackage, + pythonOlder, + fetchFromGitHub, + setuptools, + medvol, +}: + +buildPythonPackage rec { + pname = "napari-nifti"; + version = "0.0.17"; + pyproject = true; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "MIC-DKFZ"; + repo = "napari-nifti"; + rev = "refs/tags/v${version}"; + hash = "sha256-JDyJMg6rsGkfEHBwqKc2L6oRO5Y1MJJlEjUuuqp7URQ="; + }; + + build-system = [ setuptools ]; + + dependencies = [ medvol ]; + + pythonImportsCheck = [ "napari_nifti" ]; + + doCheck = false; # no tests + + meta = { + description = "Napari plugin for reading and writing NIFTI files"; + homepage = "https://github.com/MIC-DKFZ/napari-nifti"; + changelog = "https://github.com/MIC-DKFZ/napari-nifti/releases/tag/v${version}"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ bcdarwin ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 958cc28dea06..1f96dc7a4b8a 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -7979,6 +7979,8 @@ self: super: with self; { medpy = callPackage ../development/python-modules/medpy { }; + medvol = callPackage ../development/python-modules/medvol { }; + meeko = callPackage ../development/python-modules/meeko { }; meep = callPackage ../development/python-modules/meep { }; @@ -8968,6 +8970,8 @@ self: super: with self; { napari-console = callPackage ../development/python-modules/napari-console { }; + napari-nifti = callPackage ../development/python-modules/napari-nifti { }; + napari-npe2 = callPackage ../development/python-modules/napari-npe2 { }; napari-plugin-engine = callPackage ../development/python-modules/napari-plugin-engine { };