- Some Ruby interpreter bumped version

- Kernel headers 2.6.18 added (XEN virtual images)
- unifdef package added for kernel headers 2.6.18
- Python Zope and 4suite added
- Trying bioconductor packages with R-lang (still failing)
- Bumped gmp version
- Added rq cluster runner - still requires extra gems (installs, but does not run)


svn path=/nixpkgs/trunk/; revision=12766

pkgs/development/python-modules/4suite/default.nix

@@ -0,0 +1,13 @@
+{stdenv, fetchurl, python}:
+
+stdenv.mkDerivation rec {
+  version = "1.0.2";
+  name = "4suite-${version}";
+  src = fetchurl {
+    url = "mirror://sourceforge/foursuite/4Suite-XML-${version}.tar.bz2";
+    sha256 = "0g5cyqxhhiqnvqk457k8sb97r18pwgx6gff18q5296xd3zf4cias";
+  };
+  buildInputs = [python];
+  buildPhase = "true";
+  installPhase = "python ./setup.py install --prefix=$out";
+}

pkgs/development/python-modules/zope/default.nix

@@ -0,0 +1,15 @@
+{stdenv, fetchurl, python}:
+
+stdenv.mkDerivation rec {
+	version = "3.2.1";
+  name = "zope-${version}";
+  src = fetchurl {
+	  url = "http://www.zope.org/Products/Zope3/${version}/Zope-${version}.tgz";
+    sha256 = "8431984af75054e4ddfe45bf708924240f8b6b02220cd84d090138413ac82341";
+  };
+  patches = [
+    ./zope_python-2.4.4.patch
+    ./zope_python-readline.patch
+  ];
+  buildInputs = [python];
+}

pkgs/development/python-modules/zope/zope_python-2.4.4.patch

@@ -0,0 +1,12 @@
+diff -r 8833d4892dfc Zope-3.2.1/configure
+--- a/configure	Mon Aug 18 14:55:39 2008 +0200
++++ b/configure	Mon Aug 18 14:57:39 2008 +0200
+@@ -21,7 +21,7 @@ prefix="$DEFAULT_PREFIX"
+ 
+ # Place the optimal target version number (as returned by sys.version)
+ # below
+-TARGET="2.4.2"
++TARGET="2.4.4"
+ 
+ # Order a list of "acceptable" python version numbers (as returned by
+ # sys.version) below in "best" to "worst" order, not including the

pkgs/development/python-modules/zope/zope_python-readline.patch

@@ -0,0 +1,12 @@
+diff -r 8833d4892dfc Zope-3.2.1/Dependencies/zope.publisher-Zope-3.2.1/zope.publisher/http.py
+--- a/Dependencies/zope.publisher-Zope-3.2.1/zope.publisher/http.py	Mon Aug 18 14:55:39 2008 +0200
++++ b/Dependencies/zope.publisher-Zope-3.2.1/zope.publisher/http.py	Mon Aug 18 16:37:02 2008 +0200
+@@ -198,7 +198,7 @@ class HTTPInputStream(object):
+         self.cacheStream.write(data)
+         return data
+ 
+-    def readline(self):
++    def readline(self, size=None):
+         data = self.stream.readline()
+         self.cacheStream.write(data)
+         return data