diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 377d5e2587d1..171fa7593439 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -13692,6 +13692,10 @@ self: super: with self; {
     inherit (self) python;
   });
 
+  snakemake = toPythonModule (pkgs.snakemake.override {
+    python3 = python;
+  });
+
   snakemake-executor-plugin-cluster-generic = callPackage ../development/python-modules/snakemake-executor-plugin-cluster-generic { };
 
   snakemake-interface-common = callPackage ../development/python-modules/snakemake-interface-common { };