From 68f695de67334f3bf1bfb81a91c495aaf88c5afd Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Mon, 17 Feb 2025 10:53:41 +0100
Subject: [PATCH] python312Packages.niworkflows: 1.12.0 -> 1.12.2

Diff: https://github.com/nipreps/niworkflows/compare/refs/tags/1.12.0...1.12.2

Changelog: https://github.com/nipreps/niworkflows/blob/1.12.2/CHANGES.rst
---
 .../python-modules/niworkflows/default.nix    | 46 +++++++++++++------
 1 file changed, 33 insertions(+), 13 deletions(-)

diff --git a/pkgs/development/python-modules/niworkflows/default.nix b/pkgs/development/python-modules/niworkflows/default.nix
index 05e21f2834ab..5811062df376 100644
--- a/pkgs/development/python-modules/niworkflows/default.nix
+++ b/pkgs/development/python-modules/niworkflows/default.nix
@@ -2,9 +2,13 @@
   lib,
   buildPythonPackage,
   fetchFromGitHub,
+
+  # build-system
   hatch-vcs,
   hatchling,
-  pytestCheckHook,
+
+  # dependencies
+  acres,
   attrs,
   importlib-resources,
   jinja2,
@@ -26,18 +30,24 @@
   templateflow,
   traits,
   transforms3d,
+
+  # tests
+  pytest-cov-stub,
+  pytest-env,
+  pytestCheckHook,
+  writableTmpDirAsHomeHook,
 }:
 
 buildPythonPackage rec {
   pname = "niworkflows";
-  version = "1.12.0";
+  version = "1.12.2";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "nipreps";
     repo = "niworkflows";
     tag = version;
-    hash = "sha256-OWsfz5YDPy1qPpXomr4YiuCDf40Fy1pW8cNHPjHfqp4=";
+    hash = "sha256-rgnfp12SHlL3LFFMSrHlTd0tWNnA4ekxZ9kKYRvZWlw=";
   };
 
   pythonRelaxDeps = [ "traits" ];
@@ -48,6 +58,7 @@ buildPythonPackage rec {
   ];
 
   dependencies = [
+    acres
     attrs
     importlib-resources
     jinja2
@@ -73,29 +84,38 @@ buildPythonPackage rec {
 
   env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
 
-  nativeCheckInputs = [ pytestCheckHook ];
-  preCheck = ''export HOME=$(mktemp -d)'';
+  nativeCheckInputs = [
+    pytest-cov-stub
+    pytest-env
+    pytestCheckHook
+    writableTmpDirAsHomeHook
+  ];
+
   pytestFlagsArray = [ "niworkflows" ];
-  # try to download data:
+
   disabledTests = [
-    "test_GenerateCifti"
+    # try to download data:
     "ROIsPlot"
     "ROIsPlot2"
+    "niworkflows.interfaces.cifti._prepare_cifti"
+    "niworkflows.utils.misc.get_template_specs"
+    "test_GenerateCifti"
     "test_SimpleShowMaskRPT"
     "test_cifti_surfaces_plot"
-    "niworkflows.utils.misc.get_template_specs"
-    "niworkflows.interfaces.cifti._prepare_cifti"
   ];
-  disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
+
+  disabledTestPaths = [
+    "niworkflows/tests/test_registration.py"
+  ];
 
   pythonImportsCheck = [ "niworkflows" ];
 
-  meta = with lib; {
+  meta = {
     description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
     mainProgram = "niworkflows-boldref";
     homepage = "https://github.com/nipreps/niworkflows";
     changelog = "https://github.com/nipreps/niworkflows/blob/${src.tag}/CHANGES.rst";
-    license = licenses.asl20;
-    maintainers = with maintainers; [ bcdarwin ];
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ bcdarwin ];
   };
 }