diff --git a/pkgs/development/python-modules/shap/default.nix b/pkgs/development/python-modules/shap/default.nix
index e2b3deaa9230..14d7ca023884 100644
--- a/pkgs/development/python-modules/shap/default.nix
+++ b/pkgs/development/python-modules/shap/default.nix
@@ -13,7 +13,6 @@
   matplotlib,
   numba,
   numpy,
-  oldest-supported-numpy,
   opencv4,
   pandas,
   pyspark,
@@ -31,7 +30,7 @@
 
 buildPythonPackage rec {
   pname = "shap";
-  version = "0.45.1";
+  version = "0.46.0";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -40,16 +39,21 @@ buildPythonPackage rec {
     owner = "slundberg";
     repo = "shap";
     rev = "refs/tags/v${version}";
-    hash = "sha256-REMAubT9WRe0exfhO4UCLt3FFQHq4HApHnI6i2F/V1o=";
+    hash = "sha256-qW36/Xw5oaYKmaMfE5euzkED9CKkjl2O55aO0OpCkfI=";
   };
 
-  nativeBuildInputs = [
-    oldest-supported-numpy
+  postPatch = ''
+    substituteInPlace pyproject.toml \
+      --replace-fail "numpy>=2.0" "numpy"
+  '';
+
+  build-system = [
+    numpy
     setuptools
     setuptools-scm
   ];
 
-  propagatedBuildInputs = [
+  dependencies = [
     cloudpickle
     numba
     numpy