From 5614e0f74327a5649f841e408decd5f52a8cea78 Mon Sep 17 00:00:00 2001
From: "R. Ryantm" <ryantm-bot@ryantm.com>
Date: Mon, 6 Nov 2023 19:58:36 +0000
Subject: [PATCH 1/3] python310Packages.mhcflurry: 2.0.6 -> 2.1.0

---
 pkgs/development/python-modules/mhcflurry/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/mhcflurry/default.nix b/pkgs/development/python-modules/mhcflurry/default.nix
index 6ade4b8ecb2e..a83195d51686 100644
--- a/pkgs/development/python-modules/mhcflurry/default.nix
+++ b/pkgs/development/python-modules/mhcflurry/default.nix
@@ -16,14 +16,14 @@
 
 buildPythonPackage rec {
   pname = "mhcflurry";
-  version = "2.0.6";
+  version = "2.1.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "openvax";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-Cr7L6uo6Kc1PSeG5nK6zQSD7eeCFcUJUzhsX+waz7og=";
+    hash = "sha256-VyPHcNlZYgNJZb2UBFX55x+nE0GnHixkcsiTNjDCju0=";
   };
 
   nativeBuildInputs = [ pythonRelaxDepsHook ];

From a4e9c701427f5de76c103b78a6c464028a0f988d Mon Sep 17 00:00:00 2001
From: Nick Cao <nickcao@nichi.co>
Date: Tue, 7 Nov 2023 09:18:09 -0500
Subject: [PATCH 2/3] python311Packages.mhcflurry: drop hack for vestigial
 np-utils dependency

---
 pkgs/development/python-modules/mhcflurry/default.nix | 8 --------
 1 file changed, 8 deletions(-)

diff --git a/pkgs/development/python-modules/mhcflurry/default.nix b/pkgs/development/python-modules/mhcflurry/default.nix
index a83195d51686..9c2892719418 100644
--- a/pkgs/development/python-modules/mhcflurry/default.nix
+++ b/pkgs/development/python-modules/mhcflurry/default.nix
@@ -7,7 +7,6 @@
 , nose
 , pandas
 , pytestCheckHook
-, pythonRelaxDepsHook
 , pyyaml
 , scikit-learn
 , tensorflow
@@ -26,13 +25,6 @@ buildPythonPackage rec {
     hash = "sha256-VyPHcNlZYgNJZb2UBFX55x+nE0GnHixkcsiTNjDCju0=";
   };
 
-  nativeBuildInputs = [ pythonRelaxDepsHook ];
-
-  pythonRemoveDeps = [
-    # See https://github.com/openvax/mhcflurry/issues/216.
-    "np-utils"
-  ];
-
   # keras and tensorflow are not in the official setup.py requirements but are required for the CLI utilities to run.
   propagatedBuildInputs = [
     appdirs

From 9e3a70c695378873e9defaa744526cd2a9383cb5 Mon Sep 17 00:00:00 2001
From: Nick Cao <nickcao@nichi.co>
Date: Tue, 7 Nov 2023 09:18:47 -0500
Subject: [PATCH 3/3] python311Packages.mhcflurry: re-enable fixed tests

---
 pkgs/development/python-modules/mhcflurry/default.nix | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/pkgs/development/python-modules/mhcflurry/default.nix b/pkgs/development/python-modules/mhcflurry/default.nix
index 9c2892719418..2b2a7c9fcabb 100644
--- a/pkgs/development/python-modules/mhcflurry/default.nix
+++ b/pkgs/development/python-modules/mhcflurry/default.nix
@@ -67,10 +67,6 @@ buildPythonPackage rec {
     "test_run_serial"
     "test_speed_allele_specific"
     "test_speed_pan_allele"
-
-    # See https://github.com/openvax/mhcflurry/issues/217
-    "test_more"
-    "test_small"
   ];
 
   disabledTestPaths = [