diff --git a/pkgs/by-name/li/libmamba/package.nix b/pkgs/by-name/li/libmamba/package.nix
index 3b235a23135e..ce83193ca3ec 100644
--- a/pkgs/by-name/li/libmamba/package.nix
+++ b/pkgs/by-name/li/libmamba/package.nix
@@ -19,9 +19,10 @@
   python3Packages,
 }:
 
-stdenv.mkDerivation (finalAttrs:{
+stdenv.mkDerivation (finalAttrs: {
   pname = "libmamba";
   version = "2.0.4";
+
   src = fetchFromGitHub {
     owner = "mamba-org";
     repo = "mamba";
diff --git a/pkgs/development/python-modules/libmambapy/default.nix b/pkgs/development/python-modules/libmambapy/default.nix
index 40133e8d7079..aa7329649ce5 100644
--- a/pkgs/development/python-modules/libmambapy/default.nix
+++ b/pkgs/development/python-modules/libmambapy/default.nix
@@ -8,6 +8,7 @@
   libmamba,
   pybind11,
   setuptools,
+  scikit-build,
   fmt,
   spdlog,
   tl-expected,
@@ -20,36 +21,41 @@
   bzip2,
   wheel,
 }:
+
 buildPythonPackage rec {
   pname = "libmambapy";
-  version = "2024.09.25";
   pyproject = true;
 
-  src = fetchFromGitHub {
-    owner = "mamba-org";
-    repo = "mamba";
-    rev = "refs/tags/${version}";
-    hash = "sha256-65XyIlIiUxLGoj11p9fNjauknlVyHPmaTK3LxY+XRV4=";
-  };
+  inherit (libmamba) version src;
 
   nativeBuildInputs = [
     cmake
     ninja
   ];
 
+  env = {
+    NIX_CFLAGS_COMPILE = toString [
+      "-Wno-error=deprecated-declarations"
+    ];
+  };
+
   buildInputs = [
     (libmamba.override { python3Packages = pythonPackages; })
-    pybind11
-    fmt
+    curl
+    zstd
+    bzip2
     spdlog
+    fmt
     tl-expected
     nlohmann_json
     yaml-cpp
     reproc
     libsolv
-    curl
-    zstd
-    bzip2
+  ];
+
+  dependencies = [
+    scikit-build
+    pybind11
   ];
 
   build-system = [
@@ -77,7 +83,6 @@ buildPythonPackage rec {
     pypaBuildPhase
   '';
 
-
   pythonImportsCheck = [
     "libmambapy"
     "libmambapy.bindings"