From 8ac8f218a02c30ea7e202b20aa12f6eedf699445 Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Fri, 19 Jul 2024 21:27:31 +0200
Subject: [PATCH] python311Packages.arviz: 0.18.0 -> 0.19.0

Diff: https://github.com/arviz-devs/arviz/compare/refs/tags/v0.18.0...v0.19.0

Changelog: https://github.com/arviz-devs/arviz/blob/v0.19.0/CHANGELOG.md
---
 .../python-modules/arviz/default.nix          | 57 +++++++++----------
 1 file changed, 26 insertions(+), 31 deletions(-)

diff --git a/pkgs/development/python-modules/arviz/default.nix b/pkgs/development/python-modules/arviz/default.nix
index 19e69d4e087f..2d43abfd70b2 100644
--- a/pkgs/development/python-modules/arviz/default.nix
+++ b/pkgs/development/python-modules/arviz/default.nix
@@ -1,40 +1,45 @@
 {
   lib,
   buildPythonPackage,
-  dm-tree,
+  pythonOlder,
   fetchFromGitHub,
-  emcee,
+
+  # build-system
+  packaging,
+  setuptools,
+
+  # dependencies
+  dm-tree,
   h5netcdf,
   matplotlib,
-  netcdf4,
-  numba,
   numpy,
   pandas,
-  setuptools,
-  cloudpickle,
-  pytestCheckHook,
   scipy,
-  packaging,
-  pythonOlder,
   typing-extensions,
   xarray,
   xarray-einstats,
-  zarr,
+
+  # checks
+  bokeh,
+  cloudpickle,
+  emcee,
   ffmpeg,
   h5py,
-  jaxlib,
-  torchvision,
   jax,
-  # , pymc3 (circular dependency)
+  jaxlib,
+  numba,
+  numpyro,
+  #, pymc3 (circular dependency)
   pyro-ppl,
   #, pystan (not packaged)
-  numpyro,
-  bokeh,
+  pytestCheckHook,
+  torchvision,
+  zarr,
 }:
 
 buildPythonPackage rec {
   pname = "arviz";
-  version = "0.18.0";
+  version = "0.19.0";
   pyproject = true;
 
   disabled = pythonOlder "3.10";
@@ -43,7 +48,7 @@ buildPythonPackage rec {
     owner = "arviz-devs";
     repo = "arviz";
     rev = "refs/tags/v${version}";
-    hash = "sha256-SZRqSqChQBSA9/jBXN2ds9hh6TI3qZksHai1j2oVsq0=";
+    hash = "sha256-fwDCl1KWClIOBWIL/ETw3hJUyHdpVpLnRmZoZXL3QXI=";
   };
 
   build-system = [
@@ -55,7 +60,6 @@ buildPythonPackage rec {
     dm-tree
     h5netcdf
     matplotlib
-    netcdf4
     numpy
     pandas
     scipy
@@ -65,6 +69,7 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
+    bokeh
     cloudpickle
     emcee
     ffmpeg
@@ -79,7 +84,6 @@ buildPythonPackage rec {
     pytestCheckHook
     torchvision
     zarr
-    bokeh
   ];
 
   preCheck = ''
@@ -98,24 +102,15 @@ buildPythonPackage rec {
     "test_plot_kde"
     "test_plot_kde_2d"
     "test_plot_pair"
-    # Array mismatch
-    "test_plot_ts"
-    # The following two tests fail in a common venv-based setup.
-    # An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
-    "test_plot_ppc_discrete"
-    "test_plot_ppc_discrete_save_animation"
-    # Assertion error
-    "test_data_zarr"
-    "test_plot_forest"
   ];
 
   pythonImportsCheck = [ "arviz" ];
 
-  meta = with lib; {
+  meta = {
     description = "Library for exploratory analysis of Bayesian models";
     homepage = "https://arviz-devs.github.io/arviz/";
     changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
-    license = licenses.asl20;
-    maintainers = with maintainers; [ omnipotententity ];
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ omnipotententity ];
   };
 }