hdf5: enable szip with libaec (#509836)

pkgs/development/interpreters/gnudatalanguage/default.nix

@@ -41,13 +41,14 @@
   # Unfree optional dependency for hdf4 and hdf5
   enableSzip ? false,
   szip,
+  libaec,
   enableHDF4 ? true,
   hdf4,
   hdf4-forced ? null,
   enableHDF5 ? true,
   # HDF5 format version (API version) 1.10 and 1.12 is not fully compatible
   # Specify if the API version should default to 1.10
-  # netcdf currently depends on hdf5 with `usev110Api=true`
+  # netcdf currently depends on hdf5 with `apiVersion = "v110"`
   # If you wish to use HDF5 API version 1.12 (`useHdf5v110Api=false`),
   # you will need to turn NetCDF off.
   useHdf5v110Api ? true,
@@ -81,15 +82,17 @@ let
     else
       hdf5.override (
         {
-          usev110Api = useHdf5v110Api;
           mpiSupport = enableMPI;
           inherit mpi;
           szipSupport = enableSzip;
-          inherit szip;
+          inherit libaec;
         }
         // lib.optionalAttrs enableMPI {
           cppSupport = false;
         }
+        // lib.optionalAttrs useHdf5v110Api {
+          apiVersion = "v110";
+        }
       );
   netcdf-custom =
     if netcdf-forced != null then

pkgs/tools/misc/hdf5/default.nix

@@ -10,15 +10,15 @@
   fortran,
   zlibSupport ? true,
   zlib,
-  szipSupport ? false,
+  szipSupport ? true,
-  szip,
+  libaec,
   mpiSupport ? false,
   mpi,
   enableShared ? !stdenv.hostPlatform.isStatic,
   enableStatic ? stdenv.hostPlatform.isStatic,
   javaSupport ? false,
   jdk,
-  usev110Api ? false,
+  apiVersion ? null,
   threadsafe ? false,
   python3,
 }:
@@ -63,7 +63,7 @@ stdenv.mkDerivation rec {
       zlibSupport
       zlib
       szipSupport
-      szip
+      libaec
       mpiSupport
       mpi
       ;
@@ -82,31 +82,28 @@ stdenv.mkDerivation rec {
   ++ optional fortranSupport fortran;
 
   buildInputs =
-    optional fortranSupport fortran ++ optional szipSupport szip ++ optional javaSupport jdk;
+    optional fortranSupport fortran ++ optional szipSupport libaec ++ optional javaSupport jdk;
 
   propagatedBuildInputs = optional zlibSupport zlib ++ optional mpiSupport mpi;
 
   cmakeFlags = [
     "-DHDF5_INSTALL_CMAKE_DIR=${placeholder "dev"}/lib/cmake"
-    "-DBUILD_STATIC_LIBS=${lib.boolToString enableStatic}"
+    (lib.cmakeBool "BUILD_STATIC_LIBS" enableStatic)
+    (lib.cmakeBool "BUILD_SHARED_LIBS" enableShared)
+    (lib.cmakeBool "HDF5_BUILD_CPP_LIB" cppSupport)
+    (lib.cmakeBool "HDF5_BUILD_FORTRAN" fortranSupport)
+    (lib.cmakeBool "HDF5_ENABLE_SZIP_SUPPORT" szipSupport)
+    (lib.cmakeBool "HDF5_ENABLE_PARALLEL" mpiSupport)
+    (lib.cmakeBool "HDF5_BUILD_JAVA" javaSupport)
+    (lib.cmakeBool "HDF5_ENABLE_THREADSAFE" threadsafe)
+    (lib.cmakeBool "HDF5_BUILD_HL_LIB" (!threadsafe))
+    # broken in nixpkgs since around 1.14.3 -> 1.14.4.3
+    # https://github.com/HDFGroup/hdf5/issues/4208#issuecomment-2098698567
+    (lib.cmakeBool "HDF5_ENABLE_NONSTANDARD_FEATURE_FLOAT16" (
+      with stdenv.hostPlatform; !(isDarwin && isx86_64)
+    ))
   ]
-  ++ lib.optional stdenv.hostPlatform.isDarwin "-DHDF5_BUILD_WITH_INSTALL_NAME=ON"
+  ++ lib.optional (apiVersion != null) (lib.cmakeFeature "HDF5_DEFAULT_API_VERSION" apiVersion);
-  ++ lib.optional cppSupport "-DHDF5_BUILD_CPP_LIB=ON"
-  ++ lib.optional fortranSupport "-DHDF5_BUILD_FORTRAN=ON"
-  ++ lib.optional szipSupport "-DHDF5_ENABLE_SZIP_SUPPORT=ON"
-  ++ lib.optionals mpiSupport [ "-DHDF5_ENABLE_PARALLEL=ON" ]
-  ++ lib.optional enableShared "-DBUILD_SHARED_LIBS=ON"
-  ++ lib.optional javaSupport "-DHDF5_BUILD_JAVA=ON"
-  ++ lib.optional usev110Api "-DDEFAULT_API_VERSION=v110"
-  ++ lib.optionals threadsafe [
-    "-DHDF5_ENABLE_THREADSAFE:BOOL=ON"
-    "-DHDF5_BUILD_HL_LIB=OFF"
-  ]
-  # broken in nixpkgs since around 1.14.3 -> 1.14.4.3
-  # https://github.com/HDFGroup/hdf5/issues/4208#issuecomment-2098698567
-  ++ lib.optional (
-    stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isx86_64
-  ) "-DHDF5_ENABLE_NONSTANDARD_FEATURE_FLOAT16=OFF";
 
   postInstall = ''
     find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
@@ -118,17 +115,15 @@ stdenv.mkDerivation rec {
     moveToOutput 'bin/h5hlcc' "''${!outputDev}"
     moveToOutput 'bin/h5hlc++' "''${!outputDev}"
   ''
-  +
+  # The shared build creates binaries with -shared suffixes,
-    lib.optionalString enableShared
+  # so we remove these suffixes.
-      # The shared build creates binaries with -shared suffixes,
+  + lib.optionalString enableShared ''
-      # so we remove these suffixes.
+    pushd ''${!outputBin}/bin
-      ''
+    for file in *-shared; do
-        pushd ''${!outputBin}/bin
+      mv "$file" "''${file%%-shared}"
-        for file in *-shared; do
+    done
-          mv "$file" "''${file%%-shared}"
+    popd
-        done
+  ''
-        popd
-      ''
   + lib.optionalString fortranSupport ''
     mv $out/mod/shared $dev/include
     rm -r $out/mod

pkgs/top-level/all-packages.nix

@@ -2721,7 +2721,7 @@ with pkgs;
   };
 
   medfile = callPackage ../development/libraries/medfile {
-    hdf5 = hdf5.override { usev110Api = true; };
+    hdf5 = hdf5.override { apiVersion = "v110"; };
   };
 
   mhonarc = perlPackages.MHonArc;
@@ -2923,7 +2923,7 @@ with pkgs;
   maple-mono = recurseIntoAttrs (callPackage ../data/fonts/maple-font { });
 
   netcdf-mpi = netcdf.override {
-    hdf5 = hdf5-mpi.override { usev110Api = true; };
+    hdf5 = hdf5-mpi.override { apiVersion = "v110"; };
   };
 
   ioskeley-mono = recurseIntoAttrs (callPackage ../data/fonts/ioskeley-mono { });
@@ -7461,7 +7461,7 @@ with pkgs;
   };
 
   vigra = callPackage ../development/libraries/vigra {
-    hdf5 = hdf5.override { usev110Api = true; };
+    hdf5 = hdf5.override { apiVersion = "v110"; };
   };
 
   vte-gtk4 = vte.override {