From 4c3d4d963b2e34829182e735c685ea14c9645e54 Mon Sep 17 00:00:00 2001
From: Ben Darwin <bcdarwin@gmail.com>
Date: Wed, 1 Sep 2021 16:46:57 -0400
Subject: [PATCH] intensity-normalization: init at 2.0.1

---
 .../intensity-normalization/default.nix       | 54 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 pkgs/top-level/python-packages.nix            |  2 +
 3 files changed, 58 insertions(+)
 create mode 100644 pkgs/development/python-modules/intensity-normalization/default.nix

diff --git a/pkgs/development/python-modules/intensity-normalization/default.nix b/pkgs/development/python-modules/intensity-normalization/default.nix
new file mode 100644
index 000000000000..d050bd1c8d15
--- /dev/null
+++ b/pkgs/development/python-modules/intensity-normalization/default.nix
@@ -0,0 +1,54 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pythonOlder
+, pytestCheckHook
+, matplotlib
+, nibabel
+, numpy
+, scikit-fuzzy
+, scikitimage
+, scikit-learn
+, scipy
+, statsmodels
+}:
+
+buildPythonPackage rec {
+  pname = "intensity-normalization";
+  version = "2.0.1";
+  disabled = pythonOlder "3.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1c6inlhpxarvkniq8j5j2pgl32dmggn14s8c3c0xx15j7cg90413";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.cfg --replace "pytest-runner" ""
+  '';
+
+  checkInputs = [ pytestCheckHook ];
+  pythonImportsCheck = [
+    "intensity_normalization"
+    "intensity_normalization.normalize"
+    "intensity_normalization.plot"
+    "intensity_normalization.util"
+  ];
+  propagatedBuildInputs = [
+    matplotlib
+    nibabel
+    numpy
+    scikit-fuzzy
+    scikitimage
+    scikit-learn
+    scipy
+    statsmodels
+  ];
+
+  meta = with lib; {
+    homepage = "https://github.com/jcreinhold/intensity-normalization";
+    description = "MRI intensity normalization tools";
+    maintainers = with maintainers; [ bcdarwin ];
+    license = licenses.asl20;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d6734ea7e7be..18899e239524 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2957,6 +2957,8 @@ with pkgs;
 
   inklecate = callPackage ../development/compilers/inklecate {};
 
+  intensity-normalization = with python3Packages; toPythonApplication intensity-normalization;
+
   interactsh = callPackage ../tools/misc/interactsh { };
 
   interlock = callPackage ../servers/interlock {};
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 19ca4df0d28d..2a1c6905d066 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3613,6 +3613,8 @@ in {
 
   intelhex = callPackage ../development/python-modules/intelhex { };
 
+  intensity-normalization = callPackage ../development/python-modules/intensity-normalization { };
+
   internetarchive = callPackage ../development/python-modules/internetarchive { };
 
   interruptingcow = callPackage ../development/python-modules/interruptingcow { };