diff --git a/pkgs/by-name/fr/freeplane/deps.json b/pkgs/by-name/fr/freeplane/deps.json
index 8026804546ce..305e2ac2c7e8 100644
--- a/pkgs/by-name/fr/freeplane/deps.json
+++ b/pkgs/by-name/fr/freeplane/deps.json
@@ -16,8 +16,8 @@
   "com/github/ben-manes/versions#com.github.ben-manes.versions.gradle.plugin/0.51.0": {
    "pom": "sha256-oy92kCcy9iIN27EhlfozbDMfT2190MRscHcLOu4dR0E="
   },
-  "com/netflix/nebula/ospackage#com.netflix.nebula.ospackage.gradle.plugin/11.10.0": {
-   "pom": "sha256-2CtlPq9xjbpM5uYMynsMik4IhQb+DLO+jCoU49cBhwc="
+  "com/netflix/nebula/ospackage#com.netflix.nebula.ospackage.gradle.plugin/11.11.1": {
+   "pom": "sha256-vzFreAr1jNZu6HTiFIpSGFcYGz/pvN36tiQOXikDxPI="
   },
   "de/jflex#cup-parent/11b": {
    "pom": "sha256-c4L5m+Pbb+Uh8E1+/XMZ/jlj2nnWXFaOfoofWRLpmHw="
@@ -304,10 +304,10 @@
    "jar": "sha256-9UdeY+fonl22IiNImux6Vr0wNUN3IHehfCy1TBnKOiA=",
    "pom": "sha256-W3YhZzfy2pODlTrMybpY9uc500Rnh5nm1NCCz24da9M="
   },
-  "com/netflix/nebula#gradle-ospackage-plugin/11.10.0": {
-   "jar": "sha256-k8JksFhk+NuXmhaameS/qthMqjC4KXQ/ZyEDgt/4lhk=",
-   "module": "sha256-Ef8gYnVWXB04hmPUmjT73DnQ4OWvGiqO32HOtTtSyzA=",
-   "pom": "sha256-6hztETK2gdIShusXyuLdJHeGBR9mh/EiufxUWFaSUGQ="
+  "com/netflix/nebula#gradle-ospackage-plugin/11.11.1": {
+   "jar": "sha256-NAJ6yECtuBuA3kMILOM1plGIdSF6OKwCBNWoTcZpt6w=",
+   "module": "sha256-wb4zriytcHAJd+7KHPhLTNtJXJY7xYjXaAehe+94Lcc=",
+   "pom": "sha256-2XSxaCnczZP7kLyVaJAFVcxrgJhvSc/yxIZaIANLBPA="
   },
   "com/samskivert#jmustache/1.15": {
    "jar": "sha256-GuuWudwXvClUC4wzQujpHul01cYEFl7NRp3XawQcJQw=",
diff --git a/pkgs/by-name/fr/freeplane/package.nix b/pkgs/by-name/fr/freeplane/package.nix
index 6ba59f984aa4..b0209ec5022d 100644
--- a/pkgs/by-name/fr/freeplane/package.nix
+++ b/pkgs/by-name/fr/freeplane/package.nix
@@ -2,6 +2,7 @@
   stdenvNoCC,
   lib,
   fetchFromGitHub,
+  fetchpatch,
   makeBinaryWrapper,
   makeDesktopItem,
   jdk17,
@@ -35,6 +36,14 @@ stdenvNoCC.mkDerivation (finalAttrs: {
     copyDesktopItems
   ];
 
+  patches = [
+    # Plugin update to support Gradle 8.13; remove when included in a release.
+    (fetchpatch {
+      url = "https://github.com/freeplane/freeplane/commit/e58958783ef6f85ab00bf270c1f897093c4d7006.patch";
+      hash = "sha256-oQF/GbItl2ZEVlTKzojqk9xTWl8CVP7V3yig/py71hk=";
+    })
+  ];
+
   mitmCache = gradle.fetchDeps {
     inherit pname;
     data = ./deps.json;
diff --git a/pkgs/by-name/ja/jadx/deps.json b/pkgs/by-name/ja/jadx/deps.json
index d4c912cc84e7..e9f5b34f86d7 100644
--- a/pkgs/by-name/ja/jadx/deps.json
+++ b/pkgs/by-name/ja/jadx/deps.json
@@ -255,13 +255,13 @@
    "jar": "sha256-urlD5Y7dFzCSOGctunpFrsni2svd24GKjPF3I+oT+iI=",
    "pom": "sha256-4nl2N1mZxUJ/y8//PzvCD77a+tiqRRArN59cL5fI/rQ="
   },
-  "org/gradle/kotlin#gradle-kotlin-dsl-plugins/5.1.2": {
-   "jar": "sha256-tYw+XDWgAln9QC3r89pHqjrQhcP0vnL5AuoSYbNQGa4=",
-   "module": "sha256-CPnVxzwOvolk4aq3z59G93inhCcxnZJ52ZKoRBPIXPM=",
-   "pom": "sha256-Y4Th1GwfBKl4Go/Pl6nFQ5YPNNoKZ/XQI2x8EubcvqU="
+  "org/gradle/kotlin#gradle-kotlin-dsl-plugins/5.2.0": {
+   "jar": "sha256-SKlcMPRlehDfloYC01LJ2GTZemYholfoFQjINWDE/q4=",
+   "module": "sha256-fxo3x8yLU7tmBAqrbAacidiqWOJ/+nH3s2HGROtaD7A=",
+   "pom": "sha256-uB9ZcQ4lOEW0+Pbe27BWPWfD5/UPg7AiQZXjo2GAtH8="
   },
-  "org/gradle/kotlin/kotlin-dsl#org.gradle.kotlin.kotlin-dsl.gradle.plugin/5.1.2": {
-   "pom": "sha256-1JPwqwDRfMB4Zduo3oQAo5CJ1SpxzkFtyQOlEsXe1V0="
+  "org/gradle/kotlin/kotlin-dsl#org.gradle.kotlin.kotlin-dsl.gradle.plugin/5.2.0": {
+   "pom": "sha256-pXu0ObpCYKJW8tYIRx1wgRiQd6Ck3fsCjdGBe+W8Ejc="
   },
   "org/jdom#jdom2/2.0.6.1": {
    "jar": "sha256-CyD0XjoP2PDRLNxTFrBndukCsTZdsAEYh2+RdcYPMCw=",
diff --git a/pkgs/by-name/ke/keyguard/deps.json b/pkgs/by-name/ke/keyguard/deps.json
index 4b9b192b6c8d..3f272d62b19c 100644
--- a/pkgs/by-name/ke/keyguard/deps.json
+++ b/pkgs/by-name/ke/keyguard/deps.json
@@ -1114,13 +1114,13 @@
   "nl/littlerobots/version-catalog-update#nl.littlerobots.version-catalog-update.gradle.plugin/0.8.5": {
    "pom": "sha256-a+z8hpHftExSYVqCqWeS8TQBpXXleMkBkR1/qjMPgoo="
   },
-  "org/gradle/kotlin#gradle-kotlin-dsl-plugins/5.1.2": {
-   "jar": "sha256-tYw+XDWgAln9QC3r89pHqjrQhcP0vnL5AuoSYbNQGa4=",
-   "module": "sha256-CPnVxzwOvolk4aq3z59G93inhCcxnZJ52ZKoRBPIXPM=",
-   "pom": "sha256-Y4Th1GwfBKl4Go/Pl6nFQ5YPNNoKZ/XQI2x8EubcvqU="
+  "org/gradle/kotlin#gradle-kotlin-dsl-plugins/5.2.0": {
+   "jar": "sha256-SKlcMPRlehDfloYC01LJ2GTZemYholfoFQjINWDE/q4=",
+   "module": "sha256-fxo3x8yLU7tmBAqrbAacidiqWOJ/+nH3s2HGROtaD7A=",
+   "pom": "sha256-uB9ZcQ4lOEW0+Pbe27BWPWfD5/UPg7AiQZXjo2GAtH8="
   },
-  "org/gradle/kotlin/kotlin-dsl#org.gradle.kotlin.kotlin-dsl.gradle.plugin/5.1.2": {
-   "pom": "sha256-1JPwqwDRfMB4Zduo3oQAo5CJ1SpxzkFtyQOlEsXe1V0="
+  "org/gradle/kotlin/kotlin-dsl#org.gradle.kotlin.kotlin-dsl.gradle.plugin/5.2.0": {
+   "pom": "sha256-pXu0ObpCYKJW8tYIRx1wgRiQd6Ck3fsCjdGBe+W8Ejc="
   },
   "org/gradle/toolchains#foojay-resolver/0.9.0": {
    "jar": "sha256-woQImj+HVX92Ai2Z8t8oNlaKpIs/5OKSI5LVZrqBQXY=",
diff --git a/pkgs/by-name/ve/velocity/deps.json b/pkgs/by-name/ve/velocity/deps.json
index 586ce877c159..c0acf0a46367 100644
--- a/pkgs/by-name/ve/velocity/deps.json
+++ b/pkgs/by-name/ve/velocity/deps.json
@@ -92,13 +92,13 @@
    "jar": "sha256-urlD5Y7dFzCSOGctunpFrsni2svd24GKjPF3I+oT+iI=",
    "pom": "sha256-4nl2N1mZxUJ/y8//PzvCD77a+tiqRRArN59cL5fI/rQ="
   },
-  "org/gradle/kotlin#gradle-kotlin-dsl-plugins/5.1.2": {
-   "jar": "sha256-tYw+XDWgAln9QC3r89pHqjrQhcP0vnL5AuoSYbNQGa4=",
-   "module": "sha256-CPnVxzwOvolk4aq3z59G93inhCcxnZJ52ZKoRBPIXPM=",
-   "pom": "sha256-Y4Th1GwfBKl4Go/Pl6nFQ5YPNNoKZ/XQI2x8EubcvqU="
+  "org/gradle/kotlin#gradle-kotlin-dsl-plugins/5.2.0": {
+   "jar": "sha256-SKlcMPRlehDfloYC01LJ2GTZemYholfoFQjINWDE/q4=",
+   "module": "sha256-fxo3x8yLU7tmBAqrbAacidiqWOJ/+nH3s2HGROtaD7A=",
+   "pom": "sha256-uB9ZcQ4lOEW0+Pbe27BWPWfD5/UPg7AiQZXjo2GAtH8="
   },
-  "org/gradle/kotlin/kotlin-dsl#org.gradle.kotlin.kotlin-dsl.gradle.plugin/5.1.2": {
-   "pom": "sha256-1JPwqwDRfMB4Zduo3oQAo5CJ1SpxzkFtyQOlEsXe1V0="
+  "org/gradle/kotlin/kotlin-dsl#org.gradle.kotlin.kotlin-dsl.gradle.plugin/5.2.0": {
+   "pom": "sha256-pXu0ObpCYKJW8tYIRx1wgRiQd6Ck3fsCjdGBe+W8Ejc="
   },
   "org/gradle/toolchains#foojay-resolver/0.9.0": {
    "jar": "sha256-woQImj+HVX92Ai2Z8t8oNlaKpIs/5OKSI5LVZrqBQXY=",
diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix
index bb8961145f91..b557d85eff15 100644
--- a/pkgs/development/tools/build-managers/gradle/default.nix
+++ b/pkgs/development/tools/build-managers/gradle/default.nix
@@ -232,8 +232,8 @@ rec {
   # https://docs.gradle.org/current/userguide/compatibility.html
 
   gradle_8 = gen {
-    version = "8.12.1";
-    hash = "sha256-jZepeYT2y9K4X+TGCnQ0QKNHVEvxiBgEjmEfUojUbJQ=";
+    version = "8.13";
+    hash = "sha256-IPGxF2I3JUpvwgTYQ0GW+hGkz7OHVnUZxhVW6HEK7Xg=";
     defaultJava = jdk21;
   };