diff --git a/pkgs/applications/science/biology/angsd/default.nix b/pkgs/applications/science/biology/angsd/default.nix index 035cb2ca2b27..71366dc0d364 100644 --- a/pkgs/applications/science/biology/angsd/default.nix +++ b/pkgs/applications/science/biology/angsd/default.nix @@ -1,4 +1,14 @@ -{ lib, stdenv, fetchFromGitHub, htslib, zlib, bzip2, xz, curl, openssl }: +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, htslib +, zlib +, bzip2 +, xz +, curl +, openssl +}: stdenv.mkDerivation rec { pname = "angsd"; @@ -11,8 +21,20 @@ stdenv.mkDerivation rec { rev = version; }; + patches = [ + # Pull pending inclusion upstream patch for parallel buil fixes: + # https://github.com/ANGSD/angsd/pull/590 + (fetchpatch { + name = "parallel-make.patch"; + url = "https://github.com/ANGSD/angsd/commit/89fd1d898078016df390e07e25b8a3eeadcedf43.patch"; + hash = "sha256-KQgUfr3v8xc+opAm4qcSV2eaupztv4gzJJHyzJBCxqA="; + }) + ]; + buildInputs = [ htslib zlib bzip2 xz curl openssl ]; + enableParallelBuilding = true; + makeFlags = [ "HTSSRC=systemwide" "prefix=$(out)" ]; meta = with lib; {