diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 98b0394c35f1..ec61e0bd7ce4 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -22,8 +22,15 @@ stdenv.mkDerivation rec { buildInputs = [ zlib ncurses htslib ]; + preConfigure = lib.optional stdenv.hostPlatform.isStatic '' + export LIBS="-lz -lbz2 -llzma" + ''; + makeFlags = lib.optional stdenv.hostPlatform.isStatic "AR=${stdenv.cc.targetPrefix}ar"; + configureFlags = [ "--with-htslib=${htslib}" ] - ++ lib.optional (ncurses == null) "--without-curses"; + ++ lib.optional (ncurses == null) "--without-curses" + ++ lib.optional stdenv.hostPlatform.isStatic ["--without-curses" ] + ; preCheck = '' patchShebangs test/