From ecb4b982dbde16946f2d87e50f4e5e4a40953f2d Mon Sep 17 00:00:00 2001
From: kyehn <kyehn@users.noreply.github.com>
Date: Sun, 31 Aug 2025 22:38:16 +0800
Subject: [PATCH 1/3] kent: add updateScript

---
 pkgs/by-name/ke/kent/package.nix | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/pkgs/by-name/ke/kent/package.nix b/pkgs/by-name/ke/kent/package.nix
index c716287b77e4..7a8861dd4c2e 100644
--- a/pkgs/by-name/ke/kent/package.nix
+++ b/pkgs/by-name/ke/kent/package.nix
@@ -12,6 +12,9 @@
   bash,
   fetchFromGitHub,
   which,
+  writeShellScript,
+  jq,
+  nix-update,
 }:
 stdenv.mkDerivation rec {
   pname = "kent";
@@ -85,6 +88,11 @@ stdenv.mkDerivation rec {
     runHook postInstall
   '';
 
+  passthru.updateScript = writeShellScript "update-kent" ''
+    latestVersion=$(curl ''${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} --fail --silent https://api.github.com/repos/ucscGenomeBrowser/kent/releases/latest | ${lib.getExe jq} --raw-output .tag_name | grep -oP '(?<=v)\d+')
+    ${lib.getExe nix-update} kent --version $latestVersion
+  '';
+
   meta = {
     description = "UCSC Genome Bioinformatics Group's suite of biological analysis tools, i.e. the kent utilities";
     homepage = "http://genome.ucsc.edu";

From 270707595b87aeff54b09e59f93473d4fe0ccad8 Mon Sep 17 00:00:00 2001
From: kyehn <kyehn@users.noreply.github.com>
Date: Sun, 31 Aug 2025 22:39:51 +0800
Subject: [PATCH 2/3] kent: 468 -> 486

Changelog: https://github.com/ucscGenomeBrowser/kent/releases/tag/v486_base
---
 pkgs/by-name/ke/kent/package.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/by-name/ke/kent/package.nix b/pkgs/by-name/ke/kent/package.nix
index 7a8861dd4c2e..841d87548e18 100644
--- a/pkgs/by-name/ke/kent/package.nix
+++ b/pkgs/by-name/ke/kent/package.nix
@@ -18,13 +18,13 @@
 }:
 stdenv.mkDerivation rec {
   pname = "kent";
-  version = "468";
+  version = "486";
 
   src = fetchFromGitHub {
     owner = "ucscGenomeBrowser";
     repo = "kent";
     rev = "v${version}_base";
-    hash = "sha256-OM/noraW2X8WV5wqWEFiI5/JPOBmsp0fTeDdcZoXxAA=";
+    hash = "sha256-NffQ04+5rMtG/VI7YFK4Ff39DDhdh9Wlc0i1iVbg8Js=";
   };
 
   buildInputs = [

From bf210e0844c309d817a338eab6bbc20e4c03f437 Mon Sep 17 00:00:00 2001
From: kyehn <kyehn@users.noreply.github.com>
Date: Sun, 31 Aug 2025 22:52:45 +0800
Subject: [PATCH 3/3] kent: use finalAttrs and tag and writableTmpDirAsHomeHook

---
 pkgs/by-name/ke/kent/package.nix | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diff --git a/pkgs/by-name/ke/kent/package.nix b/pkgs/by-name/ke/kent/package.nix
index 841d87548e18..8c0c9d8bf0f8 100644
--- a/pkgs/by-name/ke/kent/package.nix
+++ b/pkgs/by-name/ke/kent/package.nix
@@ -1,6 +1,7 @@
 {
   lib,
   stdenv,
+  writableTmpDirAsHomeHook,
   libpng,
   libuuid,
   zlib,
@@ -16,17 +17,19 @@
   jq,
   nix-update,
 }:
-stdenv.mkDerivation rec {
+stdenv.mkDerivation (finalAttrs: {
   pname = "kent";
   version = "486";
 
   src = fetchFromGitHub {
     owner = "ucscGenomeBrowser";
     repo = "kent";
-    rev = "v${version}_base";
+    tag = "v${finalAttrs.version}_base";
     hash = "sha256-NffQ04+5rMtG/VI7YFK4Ff39DDhdh9Wlc0i1iVbg8Js=";
   };
 
+  nativeBuildInputs = [ writableTmpDirAsHomeHook ];
+
   buildInputs = [
     libpng
     libuuid
@@ -40,10 +43,10 @@ stdenv.mkDerivation rec {
 
   postPatch = ''
     substituteInPlace ./src/checkUmask.sh \
-      --replace "/bin/bash" "${bash}/bin/bash"
+      --replace-fail "/bin/bash" "${bash}/bin/bash"
 
     substituteInPlace ./src/hg/sqlEnvTest.sh \
-      --replace "which mysql_config" "${which}/bin/which ${libmysqlclient}/bin/mysql_config"
+      --replace-fail "which mysql_config" "${which}/bin/which ${libmysqlclient}/bin/mysql_config"
   '';
 
   buildPhase = ''
@@ -53,7 +56,6 @@ stdenv.mkDerivation rec {
     export CFLAGS="-fPIC"
     export MYSQLINC=$(mysql_config --include | sed -e 's/^-I//g')
     export MYSQLLIBS=$(mysql_config --libs)
-    export HOME=$TMPDIR
     export DESTBINDIR=$HOME/bin
 
     mkdir -p $HOME/lib $HOME/bin/${stdenv.hostPlatform.parsed.cpu.name}
@@ -96,9 +98,9 @@ stdenv.mkDerivation rec {
   meta = {
     description = "UCSC Genome Bioinformatics Group's suite of biological analysis tools, i.e. the kent utilities";
     homepage = "http://genome.ucsc.edu";
-    changelog = "https://github.com/ucscGenomeBrowser/kent/releases/tag/v${version}_base";
+    changelog = "https://github.com/ucscGenomeBrowser/kent/releases/tag/v${finalAttrs.version}_base";
     license = lib.licenses.unfree;
     maintainers = with lib.maintainers; [ scalavision ];
     platforms = lib.platforms.linux;
   };
-}
+})