diff --git a/pkgs/development/python-modules/torchio/default.nix b/pkgs/development/python-modules/torchio/default.nix index d0d85974c3fe..c5da7afbc19b 100644 --- a/pkgs/development/python-modules/torchio/default.nix +++ b/pkgs/development/python-modules/torchio/default.nix @@ -11,6 +11,7 @@ deprecated, einops, humanize, + jaxtyping, nibabel, numpy, packaging, @@ -24,6 +25,7 @@ # optional dependencies colorcet, matplotlib, + monai, pandas, ffmpeg-python, scikit-learn, @@ -35,14 +37,14 @@ buildPythonPackage rec { pname = "torchio"; - version = "0.21.2"; + version = "1.0.1"; pyproject = true; src = fetchFromGitHub { owner = "TorchIO-project"; repo = "torchio"; tag = "v${version}"; - hash = "sha256-HyhoF3F4EsJCOkWmoQkFqNsx8YbBsUFlQC+AggaXLXI="; + hash = "sha256-b6ED3IyQgC0A0dqYiXC0GTf6ZqwE1Ka7ojM7OJu1xfI="; }; build-system = [ @@ -53,6 +55,7 @@ buildPythonPackage rec { deprecated einops humanize + jaxtyping nibabel numpy packaging @@ -64,21 +67,28 @@ buildPythonPackage rec { typer ]; - optional-dependencies = { - csv = [ pandas ]; - plot = [ - colorcet - matplotlib - ]; - video = [ ffmpeg-python ]; - sklearn = [ scikit-learn ]; - }; + optional-dependencies = + let + extras = { + csv = [ pandas ]; + monai = [ monai ]; + plot = [ + colorcet + matplotlib + ]; + video = [ ffmpeg-python ]; + sklearn = [ scikit-learn ]; + }; + in + extras // { all = lib.concatLists (lib.attrValues extras); }; nativeCheckInputs = [ matplotlib parameterized pytestCheckHook - ]; + ] + ++ optional-dependencies.monai + ++ optional-dependencies.sklearn; disabledTests = [ # tries to download models: