diff --git a/pkgs/development/python-modules/bambi/default.nix b/pkgs/development/python-modules/bambi/default.nix index 905fc1d0b2cf..8a947ff6ce9d 100644 --- a/pkgs/development/python-modules/bambi/default.nix +++ b/pkgs/development/python-modules/bambi/default.nix @@ -91,9 +91,10 @@ buildPythonPackage rec { "test_model_without_intercept" "test_non_distributional_model" "test_normal_with_splines" - "test_predict_new_groups_fail" "test_predict_new_groups" + "test_predict_new_groups_fail" "test_predict_offset" + "test_same_variable_conditional_and_group" "test_set_alias_warnings" "test_subplot_kwargs" "test_transforms" @@ -113,8 +114,6 @@ buildPythonPackage rec { ]; disabledTestPaths = [ - # bayeux-ml is not available - "tests/test_alternative_samplers.py" # Tests require network access "tests/test_interpret.py" "tests/test_interpret_messages.py" diff --git a/pkgs/development/python-modules/pymc/default.nix b/pkgs/development/python-modules/pymc/default.nix index a017f9320c59..feb82d14628f 100644 --- a/pkgs/development/python-modules/pymc/default.nix +++ b/pkgs/development/python-modules/pymc/default.nix @@ -18,18 +18,20 @@ scipy, threadpoolctl, typing-extensions, + + writableTmpDirAsHomeHook, }: buildPythonPackage rec { pname = "pymc"; - version = "5.26.1"; + version = "5.27.0"; pyproject = true; src = fetchFromGitHub { owner = "pymc-devs"; repo = "pymc"; tag = "v${version}"; - hash = "sha256-j1v8MzAFfOmkN7pDcF91dS5Xprls8qfTQHWdaFUO4GU="; + hash = "sha256-wBeWydrHrF+wNZnqWa2k8tCaUvjcoiSrmY85LUhrQds="; }; build-system = [ @@ -50,6 +52,13 @@ buildPythonPackage rec { typing-extensions ]; + nativeBuildInputs = [ + # Arviz (imported by pymc) wants to write a stamp file to the homedir at import time. + # Without $HOME being writable, `pythonImportsCheck` fails. + # https://github.com/arviz-devs/arviz/commit/4db612908f588d89bb5bfb6b83a08ada3d54fd02 + writableTmpDirAsHomeHook + ]; + # The test suite is computationally intensive and test failures are not # indicative for package usability hence tests are disabled by default. doCheck = false; diff --git a/pkgs/development/python-modules/pytensor/default.nix b/pkgs/development/python-modules/pytensor/default.nix index 8c10e0ec811f..923b148212f9 100644 --- a/pkgs/development/python-modules/pytensor/default.nix +++ b/pkgs/development/python-modules/pytensor/default.nix @@ -3,6 +3,7 @@ stdenv, buildPythonPackage, fetchFromGitHub, + fetchpatch, # build-system setuptools, @@ -33,7 +34,7 @@ buildPythonPackage rec { pname = "pytensor"; - version = "2.36.0"; + version = "2.36.1"; pyproject = true; src = fetchFromGitHub { @@ -43,9 +44,18 @@ buildPythonPackage rec { postFetch = '' sed -i 's/git_refnames = "[^"]*"/git_refnames = " (tag: ${src.tag})"/' $out/pytensor/_version.py ''; - hash = "sha256-tzwiPp0+xNKmndTn9Y1AXiqscQWaCC8gKgQHEtkyGag="; + hash = "sha256-rXLtrkuwmEe5+64Aao490VqD96LJ37/mxekWOzWRMlw="; }; + patches = [ + # https://github.com/pymc-devs/pytensor/pull/1805 + (fetchpatch { + name = "fix-test-tri-nonconcrete-jax-compatibility.patch"; + url = "https://github.com/pymc-devs/pytensor/commit/86310f074267e24d1b3b99ecf3d9cc0b593b170d.patch"; + hash = "sha256-KRywJLixmdDJ1GGYsd5Twjiwgce0ZFxUidhTgM6Obmg="; + }) + ]; + build-system = [ setuptools cython @@ -160,7 +170,6 @@ buildPythonPackage rec { # Don't run the most compute-intense tests "tests/scan/" "tests/tensor/" - "tests/sparse/sandbox/" ]; passthru.updateScript = nix-update-script {