From 312ce6e2e5c6eab36021f7f1df59df8172e49294 Mon Sep 17 00:00:00 2001
From: kyehn <kyehn@users.noreply.github.com>
Date: Fri, 26 Sep 2025 13:19:00 +0800
Subject: [PATCH] snakemake: 9.5.1 -> 9.11.6

Changelog: https://github.com/snakemake/snakemake/blob/v9.11.6/CHANGELOG.md
---
 pkgs/by-name/sn/snakemake/package.nix | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/pkgs/by-name/sn/snakemake/package.nix b/pkgs/by-name/sn/snakemake/package.nix
index f1ae8a21a218..6549271c5ed5 100644
--- a/pkgs/by-name/sn/snakemake/package.nix
+++ b/pkgs/by-name/sn/snakemake/package.nix
@@ -10,14 +10,14 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "snakemake";
-  version = "9.5.1";
+  version = "9.11.6";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "snakemake";
     repo = "snakemake";
     tag = "v${version}";
-    hash = "sha256-cSFqPSLeM7hw1bxQZ2FhlHUP+O3iyrwBz4+Jz90Zck8=";
+    hash = "sha256-bbwpLSWCYKezFJj7EVn6wOLSzO/vShP98MMicKzdGSQ=";
   };
 
   postPatch = ''
@@ -58,6 +58,7 @@ python3Packages.buildPythonApplication rec {
     snakemake-interface-logger-plugins
     snakemake-interface-storage-plugins
     snakemake-interface-report-plugins
+    snakemake-interface-scheduler-plugins
     stopit
     tabulate
     throttler
@@ -140,6 +141,11 @@ python3Packages.buildPythonApplication rec {
     # Requires snakemake-storage-plugin-http
     "test_keep_local"
     "test_retrieve"
+
+    # Requires conda
+    "test_jupyter_notebook"
+    "test_jupyter_notebook_nbconvert"
+    "test_jupyter_notebook_draft"
   ]
   ++ lib.optionals stdenv.hostPlatform.isDarwin [
     # Unclear failure: