diff --git a/pkgs/development/ocaml-modules/phylogenetics/default.nix b/pkgs/development/ocaml-modules/phylogenetics/default.nix index b284f7ef5eba..1a23a4d3e131 100644 --- a/pkgs/development/ocaml-modules/phylogenetics/default.nix +++ b/pkgs/development/ocaml-modules/phylogenetics/default.nix @@ -1,30 +1,50 @@ -{ lib, buildDunePackage, fetchFromGitHub, ppx_deriving -, alcotest, angstrom-unix, biocaml, gnuplot, gsl, lacaml, menhir, owl, printbox }: +{ lib +, buildDunePackage +, fetchurl +, ppx_deriving +, bppsuite +, alcotest +, angstrom-unix +, biocaml +, core +, gsl +, lacaml +, menhir +, menhirLib +, printbox +}: buildDunePackage rec { pname = "phylogenetics"; - version = "unstable-2020-11-23"; + version = "0.0.0"; useDune2 = true; - src = fetchFromGitHub { - owner = "biocaml"; - repo = pname; - rev = "e6e10efa0a3a8fd61bf4ab69e91a09549cc1ded6"; - sha256 = "0pmypzp0rvlpzm8zpbcfkphwnhrpyfwfv44kshvx2f8nslmksh8c"; + src = fetchurl { + url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/${pname}-${version}.tbz"; + sha256 = "sha256:0knfh2s0jfnsc0vsq5yw5xla7m7i98xd0qv512dyh3jhkh7m00l9"; }; - minimumOCamlVersion = "4.08"; # e.g., uses Float.min + minimalOCamlVersion = "4.08"; - checkInputs = [ alcotest ]; + checkInputs = [ alcotest bppsuite ]; buildInputs = [ menhir ]; - propagatedBuildInputs = [ angstrom-unix biocaml gnuplot gsl lacaml owl ppx_deriving printbox ]; + propagatedBuildInputs = [ + angstrom-unix + biocaml + core + gsl + lacaml + menhirLib + ppx_deriving + printbox + ]; - doCheck = false; # many tests require bppsuite + doCheck = true; meta = with lib; { - inherit (src.meta) homepage; - description = "Bioinformatics library for Ocaml"; + homepage = "https://github.com/biocaml/phylogenetics"; + description = "Algorithms and datastructures for phylogenetics"; maintainers = [ maintainers.bcdarwin ]; license = licenses.cecill-b; };