diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 2abcbc809463..69ca9aaf8450 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -5387,7 +5387,9 @@ self: super: with self; {
 
   graphrag = callPackage ../development/python-modules/graphrag { };
 
-  graph-tool = callPackage ../development/python-modules/graph-tool { };
+  graph-tool = callPackage ../development/python-modules/graph-tool {
+    inherit (pkgs) cgal;
+  };
 
   graphtage = callPackage ../development/python-modules/graphtage { };
 
@@ -5492,7 +5494,9 @@ self: super: with self; {
     qemu = pkgs.qemu;
   };
 
-  gudhi = callPackage ../development/python-modules/gudhi { };
+  gudhi = callPackage ../development/python-modules/gudhi {
+    inherit (pkgs) cgal;
+  };
 
   guidance = callPackage ../development/python-modules/guidance { };
 
@@ -5988,7 +5992,7 @@ self: super: with self; {
   ifconfig-parser = callPackage ../development/python-modules/ifconfig-parser { };
 
   ifcopenshell = callPackage ../development/python-modules/ifcopenshell {
-    inherit (pkgs) libxml2;
+    inherit (pkgs) cgal libxml2;
   };
 
   ignite = callPackage ../development/python-modules/ignite { };