From e7c857571ab5b3450d8a0f7b52320f2c4a5f8374 Mon Sep 17 00:00:00 2001
From: Bruno Bzeznik <Bruno.Bzeznik@imag.fr>
Date: Wed, 12 Apr 2023 11:58:49 +0200
Subject: [PATCH 1/2] htslib: 1.16 -> 1.17

Changelog: https://github.com/samtools/htslib/releases/tag/1.17
---
 pkgs/development/libraries/science/biology/htslib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix
index 219c06ce57ad..a3b35d55c9e8 100644
--- a/pkgs/development/libraries/science/biology/htslib/default.nix
+++ b/pkgs/development/libraries/science/biology/htslib/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "htslib";
-  version = "1.16";
+  version = "1.17";
 
   src = fetchurl {
     url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
-    sha256 = "sha256-YGt8ev9zc0zwM+zRVvQFKfpXkvVFJJUqKJOMoIkNeSQ=";
+    sha256 = "sha256-djd5KIxA8HZG7HrZi5bDeMc5Fx0WKtmDmIaHg7chg58";
   };
 
   # perl is only used during the check phase.

From d69d242b7bcaa8bbadc87a68be84eb5719e35585 Mon Sep 17 00:00:00 2001
From: Bruno Bzeznik <Bruno.Bzeznik@imag.fr>
Date: Wed, 12 Apr 2023 12:00:25 +0200
Subject: [PATCH 2/2] Samtools: 1.13 -> 1.17

Changelogs:
 - https://github.com/samtools/samtools/releases/tag/1.14
 - https://github.com/samtools/samtools/releases/tag/1.15
 - https://github.com/samtools/samtools/releases/tag/1.15.1
 - https://github.com/samtools/samtools/releases/tag/1.16
 - https://github.com/samtools/samtools/releases/tag/1.16.1
 - https://github.com/samtools/samtools/releases/tag/1.17
---
 .../science/biology/samtools/default.nix            | 13 ++-----------
 1 file changed, 2 insertions(+), 11 deletions(-)

diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix
index c72dd1b19077..5e18d5ead58a 100644
--- a/pkgs/applications/science/biology/samtools/default.nix
+++ b/pkgs/applications/science/biology/samtools/default.nix
@@ -2,22 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "samtools";
-  version = "1.13";
+  version = "1.17";
 
   src = fetchurl {
     url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
-    sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";
+    sha256 = "sha256-Ot85C2KCGf1kCPFGAqTEqpDmPhizldrXIqtRlDiipyk";
   };
 
-  patches = [
-    # Pull upstream patch for ncurses-6.3 support
-    (fetchpatch {
-      name = "ncurses-6.3.patch";
-      url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";
-      sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";
-    })
-  ];
-
   # tests require `bgzip` from the htslib package
   nativeCheckInputs = [ htslib ];